Mercurial > repos > bgruening > graphclust_cmfinder

comparison test-data/model.cmfinder.stk @ 0:407180a7f27e draft default tip

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CMFinder commit f447414150c19865e904d3914a68e2479fadddce
author bgruening
date Thu, 15 Dec 2016 18:19:27 -0500
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comparison
equal deleted inserted replaced
-1:000000000000 0:407180a7f27e
1 # STOCKHOLM 1.0
2 #=GF AU CMfinder 0.2
3
4 #=GS 7 WT 1.00
5 #=GS 9 WT 1.00
6 #=GS 10 WT 1.00
7 #=GS 15 WT 1.00
8 #=GS 16 WT 1.00
9 #=GS 17 WT 1.00
10 #=GS 18 WT 1.00
11 #=GS 23 WT 1.00
12 #=GS 28 WT 1.00
13 #=GS 30 WT 1.00
14 #=GS 31 WT 1.00
15 #=GS 32 WT 1.00
16 #=GS 33 WT 1.00
17 #=GS 35 WT 1.00
18 #=GS 37 WT 1.00
19 #=GS 46 WT 1.00
20
21 #=GS 7 DE 1.. 83 79.124153
22 #=GS 9 DE 1.. 73 96.426384
23 #=GS 10 DE 1.. 73 66.977600
24 #=GS 15 DE 1.. 73 79.247490
25 #=GS 16 DE 1.. 72 74.848335
26 #=GS 17 DE 1.. 71 90.305908
27 #=GS 18 DE 1.. 72 81.752869
28 #=GS 23 DE 1.. 74 80.096992
29 #=GS 28 DE 1.. 71 92.405518
30 #=GS 30 DE 1.. 72 75.032211
31 #=GS 31 DE 1.. 73 95.823235
32 #=GS 32 DE 1.. 73 94.321754
33 #=GS 33 DE 1.. 72 74.710342
34 #=GS 35 DE 1.. 72 71.951927
35 #=GS 37 DE 1.. 82 77.369476
36 #=GS 46 DE 1.. 72 83.877258
37
38 7 GUCAGGAUGGCCGAG-CGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCC
39 #=GR 7 SS <<<<<<<.....................<<<<<.......>>>>>.....
40 9 GCUUCUGUAGUGUAG-UGGU-UAUCACGUUCGCCUCACACGCGAA-----
41 #=GR 9 SS <<<<<<<.....................<<<<<.......>>>>>.....
42 10 GCCCGGCUAGCUCAGUCGGU--AGAGCAUGAGACUCUUAAUCUCA-----
43 #=GR 10 SS <<<<<<<.....................<<<<<.......>>>>>.....
44 15 GCCGAAAUAGCUCAGUUGGG--AGAGCGUUAGACUGAAGAUCUAA-----
45 #=GR 15 SS <<<<<<<.....................<<<<<.......>>>>>.....
46 16 GGGGAUGUAGCUCAG-UGGU--AGAGCGCAUGCUUCGCAUGUAUG-----
47 #=GR 16 SS <<<<<<<.....................<<<<<.......>>>>>.....
48 17 GCAUUGGUGGUUCAG-UGGU--AGAAUUCUCGCCUCCCACGCGGG-----
49 #=GR 17 SS <<<<<<<.....................<<<<<.......>>>>>.....
50 18 GCGUUGGUGGUAUAG-UGGU-GAGCAUAGCUGCCUUCCAAGCAGU-----
51 #=GR 18 SS <<<<<<<.....................<<<<<.......>>>>>.....
52 23 GGCCGGUUAGCUCAGUUGGU-UAGAGCGUGGUGCUAAUAACGCCA-----
53 #=GR 23 SS <<<<-<<.....................<<<<<.......>>>>>.....
54 28 GCAUUGGUGGUUCAG-UGGU--AGAAUUCUCGCCUGCCACGCGGG-----
55 #=GR 28 SS <<<<<<<.....................<<<<<.......>>>>>.....
56 30 GGCUCGUUGGUCUAG-GGGU--AUGAUUCUCGCUUAGGGUGCGAG-----
57 #=GR 30 SS <<<<<<<.....................<<<<<.......>>>>>.....
58 31 GUUUCCGUAGUGUAG-UGGU-UAUCACGUUCGCCUCACACGCGAA-----
59 #=GR 31 SS <<<<<<<.....................<<<<<.......>>>>>.....
60 32 GUUUCCGUAGUGUAG-CGGU-UAUCACAUUCGCCUCACACGCGAA-----
61 #=GR 32 SS <<<<<<<.....................<<<<<.......>>>>>.....
62 33 UCCUCGUUAGUAUAG-UGGU-GAGUAUCCCCGCCUGUCACGCGGG-----
63 #=GR 33 SS <<<<<<<.....................<<<<<.......>>>>>.....
64 35 UCCCUGGUGGUCUAG-UGGC-UAGGAUUCGGCGCUUUCACCGCCG-----
65 #=GR 35 SS <-<<<<<.....................<<<<<.......>>>>>.....
66 37 GGUAGCGUGGCCGAG-CGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCU
67 #=GR 37 SS <<<<<<<.....................<<<<<.......>>>>>.....
68 46 UCCCUGGUGGUCUAG-UGGU-UAGGAUUCGGCGCUCUCACCGCCG-----
69 #=GR 46 SS <<<<<<<.....................<<<<<.......>>>>>.....
70 #=GC SS_cons (((((((,,,,,,,,,,,,,,,,,,,,,<<<<<_______>>>>>,,,,,
71 #=GC RF GuuUuggUAGUuuAGUUGGUCUAGAAcaUUcgcCUcAcAcgcgAAUCUCu
72
73 7 CCUGGAGG-CGUGGGUUCGAAUCCCACUUCUGACA
74 #=GR 7 SS ..........<<<<<.......>>>>>>>>>>>>.
75 9 -----AGGUCCCCGGUUCGAAACCGGGCAGAAGCA
76 #=GR 9 SS ..........<<<<<.......>>>>>>>>>>>>.
77 10 -----GGGUCGUGGGUUCGAGCCCCACGUUGGGCG
78 #=GR 10 SS ..........<<<<<.......>>>>>>>>>>>>.
79 15 -----AGGUCCCUGGUUCGAUCCCGGGUUUCGGCA
80 #=GR 15 SS ..........<<<<<.......>>>>>>>>>>>>.
81 16 -----AGGCCCCGGGUUCGAUCCCCGGCAUCUCCA
82 #=GR 16 SS ..........<<<<<.......>>>>>>>>>>>>.
83 17 -----AGA-CCCGGGUUCAAUUCCCGGCCAAUGCA
84 #=GR 17 SS ..........<<<<<.......>>>>>>>>>>>>.
85 18 -----UGA-CCCGGGUUCGAUUCCCGGCCAACGCA
86 #=GR 18 SS ..........<<<<<.......>>>>>>>>>>>>.
87 23 -----AGGUCGCGGGUUCGAUCCCCGUACGGGCCA
88 #=GR 23 SS ..........<<<<<.......>>>>>>>->>>>.
89 28 -----AGG-CCCGGGUUCGAUUCCCGGCCAAUGCA
90 #=GR 28 SS ..........<<<<<.......>>>>>>>>>>>>.
91 30 -----AGGUCCCGGGUUCAAAUCCCGGACGAGCCC
92 #=GR 30 SS ..........<<<<<.......>>>>>>>>>>>>.
93 31 -----AGGUCCCCGGUUCGAAACCGGGCGGAAACA
94 #=GR 31 SS ..........<<<<<.......>>>>>>>>>>>>.
95 32 -----AGGUCCCCGGUUCGAUCCCGGGCGGAAACA
96 #=GR 32 SS ..........<<<<<.......>>>>>>>>>>>>.
97 33 -----AGA-CCGGGGUUCGAUUCCCCGACGGGGAG
98 #=GR 33 SS ..........<<<<<.......>>>>>>>>>>>>.
99 35 -----CGC-CCCGGGUUCGAUUCCCGGCCAGGAAU
100 #=GR 35 SS ..........<<<<<.......>>>>>>>>>>->.
101 37 UCGG-AGG-CGUGGGUUCGAAUCCCACCGCUGCCA
102 #=GR 37 SS ..........<<<<<.......>>>>>>>>>>>>.
103 46 -----CGG-CCCGGGUUCGAUUCCCGGUCAGGGAA
104 #=GR 46 SS ..........<<<<<.......>>>>>>>>>>>>.
105 #=GC SS_cons ,,,,,,,,,,<<<<<_______>>>>>))))))):
106 #=GC RF uCuGgAGGUCCCgGGUUCGAUUCCcGGccaAaaCA
107 //