Mercurial > repos > bgruening > graphclust_align_cluster

comparison test-data/alignment1.rnaz.out @ 0:5fba0aafe8f1 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
author bgruening
date Sat, 27 Oct 2018 13:09:04 -0400
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-1:000000000000 0:5fba0aafe8f1
1
2 ############################ RNAz 2.1 ##############################
3
4 Sequences: 5
5 Columns: 51
6 Reading direction: forward
7 Mean pairwise identity: 44.05
8 Shannon entropy: 1.03471
9 G+C content: 0.31965
10 Mean single sequence MFE: -5.08
11 Consensus MFE: -7.64
12 Energy contribution: -3.12
13 Covariance contribution: -4.52
14 Combinations/Pair: 2.89
15 Mean z-score: 0.22
16 Structure conservation index: 1.50
17 Background model: dinucleotide
18 Decision model: structural RNA alignment quality
19 SVM decision value: 3.53
20 SVM RNA-class probability: 0.999916
21 Prediction: RNA
22
23 ######################################################################
24
25 >SEQ47_2_50_+
26 AGGUAU-UAGAAAAAC-CAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC
27 .(((..-.......))-)......((((((.....)))))).......... ( -4.20, z-score = 0.02, S)
28 >SEQ42_1_50_+
29 GUAAAUAUAGUUUAAC-CAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC
30 .........((((...-..)))).((((((.....)))))).......... ( -5.90, z-score = -0.43, R)
31 >SEQ41_1_50_+
32 ACUCUUUUAGUAUAAA-UAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC
33 .........((((...-..)))).(((((.......))))).......... ( -1.80, z-score = 1.22, R)
34 >SEQ39_1_50_+
35 GUUCUUGUAGUUGAAA-UACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGU
36 ....(((((.......-)))))(((((((.......)))))))........ ( -7.30, z-score = -0.10, R)
37 >SEQ34_1_51_+
38 CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUU
39 ..............((((...((((((((.......))))).)))..)))) ( -6.20, z-score = 0.37, R)
40 >consensus
41 AUGAAUAUAGUUUAAA_UAGAACAUUAGAUUUUCAAACUAAUAGUAGAGGC
42 .........((((......)))).(((((.......))))).......... ( -7.64 = -3.12 + -4.52)