Mercurial > repos > bgruening > graphclust_align_cluster
comparison test-data/alignment2.rnaz.out @ 0:5fba0aafe8f1 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
| author | bgruening |
|---|---|
| date | Sat, 27 Oct 2018 13:09:04 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:5fba0aafe8f1 |
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| 1 | |
| 2 ############################ RNAz 2.1 ############################## | |
| 3 | |
| 4 Sequences: 5 | |
| 5 Columns: 70 | |
| 6 Reading direction: forward | |
| 7 Mean pairwise identity: 99.43 | |
| 8 Shannon entropy: 0.01031 | |
| 9 G+C content: 0.49714 | |
| 10 Mean single sequence MFE: -14.75 | |
| 11 Consensus MFE: -14.41 | |
| 12 Energy contribution: -14.41 | |
| 13 Covariance contribution: 0.00 | |
| 14 Combinations/Pair: 1.00 | |
| 15 Mean z-score: -0.20 | |
| 16 Structure conservation index: 0.98 | |
| 17 Background model: dinucleotide | |
| 18 Decision model: structural RNA alignment quality | |
| 19 SVM decision value: -1.57 | |
| 20 SVM RNA-class probability: 0.014380 | |
| 21 Prediction: OTHER | |
| 22 | |
| 23 ###################################################################### | |
| 24 | |
| 25 >SEQ4_526_595_+ | |
| 26 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC | |
| 27 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) | |
| 28 >SEQ5_526_595_+ | |
| 29 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC | |
| 30 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) | |
| 31 >SEQ16_526_595_+ | |
| 32 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC | |
| 33 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) | |
| 34 >SEQ19_523_592_+ | |
| 35 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC | |
| 36 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) | |
| 37 >SEQ14_529_598_+ | |
| 38 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC | |
| 39 (((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score = -0.67, R) | |
| 40 >consensus | |
| 41 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC | |
| 42 (((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 + 0.00) |