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comparison glimmer_gbk_to_orf.xml @ 4:d6e786f3b225 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit a80e3e4aa3a40970af507bf9119cf7f1c2ffb336
author iuc
date Mon, 16 Dec 2024 14:41:26 +0000
parents a908a13f8de3
children
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3:73767adac9df 4:d6e786f3b225
1 <tool id="glimmer_gbk_to_orf" name="Extract ORF" version="@WRAPPER_VERSION@"> 1 <tool id="glimmer_gbk_to_orf" name="Extract ORF" version="@WRAPPER_VERSION@" profile="@PROFILE_VERSION@">
2 <description>from a GenBank file</description> 2 <description>from a GenBank file</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command><![CDATA[ 8 <command><![CDATA[
9 python '$__tool_directory__/glimmer_gbk_to_orf.py' 9 python '$__tool_directory__/glimmer_gbk_to_orf.py'
10 -g '$infile' 10 -g '$infile'
11 -a '$aa_output' 11 -a '$aa_output'
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <param name="infile" type='data' format="genbank" label="gene bank file"/> 16 <param name="infile" type='data' format="genbank" label="gene bank file"/>
17 </inputs> 17 </inputs>
18 <outputs> 18 <outputs>
19 <data name="aa_output" format="fasta" /> 19 <data name="aa_output" format="fasta" label="${tool.name} on ${on_string}: Amino acids"/>
20 <data name="nc_output" format="fasta" /> 20 <data name="nc_output" format="fasta" label="{tool.name} on ${on_string}: Nucleotides"/>
21 </outputs> 21 </outputs>
22 <tests> 22 <tests>
23 <test> 23 <test>
24 <param name="infile" value="test.gbk" /> 24 <param name="infile" value="test.gbk" />
25 <output name="aa_output" file="orf_aa.fa" /> 25 <output name="aa_output" file="orf_aa.fa" />