Mercurial > repos > bgruening > flexynesis_utils

comparison convert.py @ 3:f413f828ef30 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis commit 6b520305ec30e6dc37eba92c67a5368cea0fc5ad
author bgruening
date Wed, 23 Jul 2025 07:50:03 +0000
parents e5ecfffcfe45
children
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2:e5ecfffcfe45 3:f413f828ef30
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8 def tabular_to_csv(tabular_file, csv_file): 8 def tabular_to_csv(tabular_file, csv_file):
9 """Convert tabular (TSV) to CSV""" 9 """Convert tabular (TSV) to CSV"""
10 data = pd.read_csv(tabular_file, sep="\t") 10 data = pd.read_csv(tabular_file, sep="\t")
11 if data.columns[0] == '' or data.columns[0].startswith('Unnamed:'):
12 data.columns = ['ID'] + list(data.columns[1:])
11 data.to_csv(csv_file, index=False) 13 data.to_csv(csv_file, index=False)
12 14
13 15
14 def csv_to_tabular(csv_file, tabular_file): 16 def csv_to_tabular(csv_file, tabular_file):
15 """Convert CSV to tabular (TSV)""" 17 """Convert CSV to tabular (TSV)"""
16 data = pd.read_csv(csv_file) 18 data = pd.read_csv(csv_file)
19 if data.columns[0] == '' or data.columns[0].startswith('Unnamed:'):
20 data.columns = ['ID'] + list(data.columns[1:])
17 data.to_csv(tabular_file, sep="\t", index=False) 21 data.to_csv(tabular_file, sep="\t", index=False)
18 22
19 23
20 if __name__ == "__main__": 24 if __name__ == "__main__":
21 input_file = sys.argv[1] 25 input_file = sys.argv[1]