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comparison flexynesis.xml @ 4:1a5f8cedda43 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flexynesis commit d3154a8d94e936c33056665edc74d103e54fc981
author bgruening
date Mon, 30 Jun 2025 17:19:10 +0000
parents 525c661a7fdc
children 466b593fd87e
comparison
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3:525c661a7fdc 4:1a5f8cedda43
1043 </element> 1043 </element>
1044 </output_collection> 1044 </output_collection>
1045 <output_collection name="plots" type="list"> 1045 <output_collection name="plots" type="list">
1046 <element name="job.embeddings_test_pca_Erlotinib_known"> 1046 <element name="job.embeddings_test_pca_Erlotinib_known">
1047 <assert_contents> 1047 <assert_contents>
1048 <has_image_center_of_mass center_of_mass="962,732" eps="5"/> 1048 <has_image_center_of_mass center_of_mass="962,732" eps="20"/>
1049 <has_image_channels channels="3"/> 1049 <has_image_channels channels="3"/>
1050 <has_image_height height="1461"/> 1050 <has_image_height height="1461" delta="10"/>
1051 <has_image_width width="1941"/> 1051 <has_image_width width="1941" delta="10"/>
1052 </assert_contents> 1052 </assert_contents>
1053 </element> 1053 </element>
1054 <element name="job.embeddings_test_pca_Erlotinib_predicted"> 1054 <element name="job.embeddings_test_pca_Erlotinib_predicted">
1055 <assert_contents> 1055 <assert_contents>
1056 <has_image_center_of_mass center_of_mass="959.5,732.5" eps="5"/> 1056 <has_image_center_of_mass center_of_mass="959.5,732.5" eps="20"/>
1057 <has_image_channels channels="3"/> 1057 <has_image_channels channels="3"/>
1058 <has_image_height height="1461"/> 1058 <has_image_height height="1461" delta="10"/>
1059 <has_image_width width="1941"/> 1059 <has_image_width width="1941" delta="10"/>
1060 </assert_contents> 1060 </assert_contents>
1061 </element> 1061 </element>
1062 </output_collection> 1062 </output_collection>
1063 </test> 1063 </test>
1064 <!-- test 11: km plot --> 1064 <!-- test 11: km plot -->
1074 </section> 1074 </section>
1075 </expand> 1075 </expand>
1076 <output_collection name="plots" type="list"> 1076 <output_collection name="plots" type="list">
1077 <element name="clin_km_km_risk_subtypes"> 1077 <element name="clin_km_km_risk_subtypes">
1078 <assert_contents> 1078 <assert_contents>
1079 <has_image_center_of_mass center_of_mass="971,732" eps="5"/> 1079 <has_image_center_of_mass center_of_mass="971,732" eps="20"/>
1080 <has_image_channels channels="3"/> 1080 <has_image_channels channels="3"/>
1081 <has_image_height height="1461"/> 1081 <has_image_height height="1461" delta="10"/>
1082 <has_image_width width="1941"/> 1082 <has_image_width width="1941" delta="10"/>
1083 </assert_contents> 1083 </assert_contents>
1084 </element> 1084 </element>
1085 </output_collection> 1085 </output_collection>
1086 </test> 1086 </test>
1087 <!-- test 12: cox plot --> 1087 <!-- test 12: cox plot -->
1100 </section> 1100 </section>
1101 </expand> 1101 </expand>
1102 <output_collection name="plots" type="list"> 1102 <output_collection name="plots" type="list">
1103 <element name="job.final_model_cox_hazard_ratios"> 1103 <element name="job.final_model_cox_hazard_ratios">
1104 <assert_contents> 1104 <assert_contents>
1105 <has_image_center_of_mass center_of_mass="972,737" eps="5"/> 1105 <has_image_center_of_mass center_of_mass="972,737" eps="20"/>
1106 <has_image_channels channels="3"/> 1106 <has_image_channels channels="3"/>
1107 <has_image_height height="1461"/> 1107 <has_image_height height="1461" delta="10"/>
1108 <has_image_width width="1941"/> 1108 <has_image_width width="1941" delta="10"/>
1109 </assert_contents> 1109 </assert_contents>
1110 </element> 1110 </element>
1111 </output_collection> 1111 </output_collection>
1112 </test> 1112 </test>
1113 <!-- test 13: scatter plot --> 1113 <!-- test 13: scatter plot -->
1122 </section> 1122 </section>
1123 </expand> 1123 </expand>
1124 <output_collection name="plots" type="list"> 1124 <output_collection name="plots" type="list">
1125 <element name="job.predicted_labels_scatter_Erlotinib"> 1125 <element name="job.predicted_labels_scatter_Erlotinib">
1126 <assert_contents> 1126 <assert_contents>
1127 <has_image_center_of_mass center_of_mass="969,735" eps="5"/> 1127 <has_image_center_of_mass center_of_mass="969,735" eps="20"/>
1128 <has_image_channels channels="3"/> 1128 <has_image_channels channels="3"/>
1129 <has_image_height height="1461"/> 1129 <has_image_height height="1461" delta="10"/>
1130 <has_image_width width="1940"/> 1130 <has_image_width width="1940" delta="10"/>
1131 </assert_contents> 1131 </assert_contents>
1132 </element> 1132 </element>
1133 </output_collection> 1133 </output_collection>
1134 </test> 1134 </test>
1135 <!-- test 14: concordance plot --> 1135 <!-- test 14: concordance plot -->
1255 </section> 1255 </section>
1256 </expand> 1256 </expand>
1257 <output_collection name="plots" type="list"> 1257 <output_collection name="plots" type="list">
1258 <element name="job.final_model_cox_hazard_ratios"> 1258 <element name="job.final_model_cox_hazard_ratios">
1259 <assert_contents> 1259 <assert_contents>
1260 <has_image_center_of_mass center_of_mass="972,737" eps="5"/> 1260 <has_image_center_of_mass center_of_mass="972,737" eps="20"/>
1261 <has_image_channels channels="3"/> 1261 <has_image_channels channels="3"/>
1262 <has_image_height height="1461"/> 1262 <has_image_height height="1461" delta="10"/>
1263 <has_image_width width="1941"/> 1263 <has_image_width width="1941" delta="10"/>
1264 </assert_contents> 1264 </assert_contents>
1265 </element> 1265 </element>
1266 </output_collection> 1266 </output_collection>
1267 </test> 1267 </test>
1268 </tests> 1268 </tests>