Mercurial > repos > bgruening > find_subsequences

comparison find_subsequences.xml @ 8:e614ec7a43b8 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit caa6f11d80692d7e03f2224f69a535ddd577746e
author bgruening
date Wed, 12 Jul 2017 11:51:17 -0400
parents 99f356eeba15
children
comparison
equal deleted inserted replaced
7:99f356eeba15 8:e614ec7a43b8
1 <tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.2"> 1 <tool id="bg_find_subsequences" name="Nucleotide subsequence search" version="0.3">
2 <description>providing regions in BED format</description> 2 <description>providing regions in BED format</description>
3 <requirements> 3 <requirements>
4 <!-- Contains also the Conda dependency, see https://anaconda.org/anaconda/biopython --> 4 <requirement type="package" version="1.70">biopython</requirement>
5 <requirement type="package" version="1.65">biopython</requirement>
6 </requirements> 5 </requirements>
7 <command interpreter="python"> 6 <command>
8 <![CDATA[ 7 <![CDATA[
9 find_subsequences.py 8 python '$__tool_directory__/find_subsequences.py'
10 --input "${input}" 9 --input '${input}'
11 --output "${output}" 10 --output '${output}'
12 --pattern "$pattern_conditional.pattern" 11 --pattern '$pattern_conditional.pattern'
13 #if $input.ext == 'fasta': 12 #if $input.ext == 'fasta':
14 --format 'fasta' 13 --format 'fasta'
15 #else: 14 #else:
16 --format 'fastq' 15 --format 'fastq'
17 #end if 16 #end if