diff EDeN_test.xml @ 0:99091a5d5c84 draft

Uploaded
author bgruening
date Wed, 04 Sep 2013 05:10:04 -0400
parents
children a3edc97e056c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/EDeN_test.xml	Wed Sep 04 05:10:04 2013 -0400
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+<tool id="bg_eden_test" name="EDeN Test" version="0.1">
+    <description></description>
+    <requirements>
+    </requirements>
+    <command>
+        EDeN --action TEST
+        
+        --input_data_file_name $infile
+        --model_file_name $model_outfile
+
+        --file_type "SPARSE_VECTOR"
+        --binary_file_type
+
+        --kernel_type $kernel_type
+        --graph_type $graph_type
+
+    </command>
+    <inputs>
+        <param format="eden_sparse_vector" name="infile" type="data" label="Input Graph" help=""/>
+
+        <param name="kernel_type" type="select" display="radio" label="Type of the Kernel">
+            <option value="NSPDK">NSPDK</option>
+            <option value="WDK">WDK</option>
+            <option value="PBK">PBK</option>
+            <option value="USPK">USPK</option>
+            <option value="DDK">DDK</option>
+            <option value="NSDDK">ANSDDK</option>
+            <option value="SK">SK [NSPDK]</option>
+        </param>
+
+        <param name="graph_type" type="select" display="radio" label="Type of Graph">
+            <option value="DIRECTED">directed</option>
+            <option value="UNDIRECTED">undirected</option>
+        </param>
+
+    </inputs>
+    <outputs>
+        <data format="txt" name="model_outfile" label="Generated  from ${on_string}"/>
+    </outputs>
+    <tests>
+        <test>
+        </test>
+    </tests>
+    <help>
+
+.. class:: infomark
+
+**What it does** 
+
+The linear model is induced using the accelerated stochastic gradient descent technique by Léon Bottou and Yann LeCun.
+When the target information is 0, a self-training algorithm is used to impute a positive or negative class to the unsupervised instances.
+If the target information is imbalanced a minority class resampling technique is used to rebalance the training set.
+
+This tool is part of the EDeN (Explicit Decomposition with Neighborhoods) suite, developed by Fabrizio Costa.
+
+    </help>
+</tool>