Mercurial > repos > bgruening > eden_toolbox
diff EDeN_test.xml @ 7:59b3b6ce10bb draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 29 Oct 2013 11:07:49 -0400 |
| parents | a3edc97e056c |
| children | 9262f801d739 |
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--- a/EDeN_test.xml Thu Sep 05 12:52:45 2013 -0400 +++ b/EDeN_test.xml Tue Oct 29 11:07:49 2013 -0400 @@ -1,15 +1,31 @@ <tool id="bg_eden_test" name="EDeN Test" version="0.1"> <description></description> - <requirements> - </requirements> + <macros> + <import>eden_macros.xml</import> + </macros> + <expand macro="requirements" /> <command> + tmp_dir=`mktemp -d -u`; EDeN --action TEST - --input_data_file_name $sparse_vector_infile + --input_data_file_name $sparse_vector_infile + --file_type "SPARSE_VECTOR" + --binary_file_type + --model_file_name $model_infile - --file_type "SPARSE_VECTOR" - --binary_file_type + @kernel_type_options@ + + --graph_type $graph_type + + @normalization_kernel_hash_radius_dist_vertex@ + + --output_directory_path \$tmp_dir + --minimal_output + + ; + cp \$tmp_dir/prediction $output; + rm \$tmp_dir -rf </command> <inputs> @@ -17,6 +33,12 @@ <param format="txt" name="model_infile" type="data" label="Input Model" help="created with the EDeN Train program"/> + <expand macro="kernel_type_options" /> + + <expand macro="graph_types" /> + + <expand macro="normalization_kernel_hash_radius_dist_vertex" /> + </inputs> <outputs> <data format="tabular" name="output" label="Generated from ${on_string}"/> @@ -35,7 +57,7 @@ When the target information is 0, a self-training algorithm is used to impute a positive or negative class to the unsupervised instances. If the target information is imbalanced a minority class resampling technique is used to rebalance the training set. -This tool is part of the EDeN (Explicit Decomposition with Neighborhoods) suite, developed by Fabrizio Costa. +@references@ </help> </tool>
