Mercurial > repos > bgruening > eden_rna_cross_validation_workflow
comparison readme.rst @ 0:dd85dc28075f draft
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| author | bgruening |
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| date | Thu, 15 May 2014 12:17:52 -0400 |
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| -1:000000000000 | 0:dd85dc28075f |
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| 1 This package is a Galaxy workflow for RNA sequence cross validation. | |
| 2 | |
| 3 It uses the EDeN suite to train and test on a known set of | |
| 4 RNA sequences. The negative set of RNA sequences is shuffled | |
| 5 on the input dataset maintaining composition with shuffleseq (EMBOSS). | |
| 6 | |
| 7 See http://www.galaxyproject.org for information about the Galaxy Project. | |
| 8 | |
| 9 | |
| 10 Sample Data | |
| 11 =========== | |
| 12 | |
| 13 | |
| 14 | |
| 15 Citation | |
| 16 ======== | |
| 17 | |
| 18 | |
| 19 | |
| 20 Availability | |
| 21 ============ | |
| 22 | |
| 23 This workflow is available on the main Galaxy Tool Shed: | |
| 24 | |
| 25 http://toolshed.g2.bx.psu.edu/view/bgruening/eden_rna_cross_validation_workflow | |
| 26 | |
| 27 Development is being done on github: | |
| 28 | |
| 29 https://github.com/bgruening/galaxytools/workflows/EDeN/ | |
| 30 | |
| 31 | |
| 32 Dependencies | |
| 33 ============ | |
| 34 | |
| 35 These dependencies should be resolved automatically via the Galaxy Tool Shed: | |
| 36 | |
| 37 * http://toolshed.g2.bx.psu.edu/view/bgruening/glimmer3 | |
| 38 * http://toolshed.g2.bx.psu.edu/view/devteam/emboss_5 |