
>TMV
UGCAACUUGAGGUAGUCAAGAUGCAUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGAGGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA
Sequence length:  214
Using TMV as file identifier

DotKnot is running...
Predicting pseudoknots...

Detected pseudoknots:
35 56 -10.97
ACGGAUUGUGUCCGUAAUCACA
(((((.[[[[)))))...]]]]

57 78 -12.92
CGUGGUGCGUACGAUAACGCAU
(((.[[[[[[)))...]]]]]]

79 108 -8.16
AGUGUUUUUCCCUCCACUUAAAUCGAAGGG
((((.....[[[[.))))........]]]]

111 176 -26.94
GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGA
((((((....[[[[((((((.....(((((((...)))))))))))))))))))........]]]]

192 210 -13.83
CCGUUACCCCCGGUAGGGG
(((...[[[[)))..]]]]

