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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 58a5eccb3ed4073ff53852a0d40af19d18c52790
author bgruening
date Wed, 09 Apr 2025 15:53:13 +0000
parents 07a800aeafa0
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
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07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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1 <tool id="diff" name="diff" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@" profile="23.0">
1
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2 <description>analyzes two files and generates an unidiff text file with information about the differences and an optional Html report</description>
2
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3 <macros>
4
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4 <token name="@TOOL_VERSION@">3.10</token>
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541b86bad943 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 58a5eccb3ed4073ff53852a0d40af19d18c52790
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5 <token name="@GALAXY_VERSION@">1</token>
2
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6 </macros>
0
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7 <requirements>
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8 <requirement type="package" version="@TOOL_VERSION@">diffutils</requirement>
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9 <requirement type="package" version="4.8">sed</requirement>
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10 </requirements>
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11 <stdio>
2
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12 <exit_code range="2:" level="fatal" description="Something went wrong trying to check differences in files. Please check output log for more details."/>
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13 <regex match="diff: memory exhausted" source="stdout" level="fatal_oom" description="Out of memory error occurred"/>
0
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14 </stdio>
2
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15 <command><![CDATA[
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07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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16 diff
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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17 #if $report_format.report_format_select == 'txt_lines' or $report_format.report_format_select == 'html'
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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18 ## the -u option is needed to convert the output later to HTML
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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19 --unified=$report_format.unified
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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20 #else if $report_format.report_format_select == 'txt_columns'
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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21 -y
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22 #end if
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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23 ## If the compared input files differ the diff command returns exit-code 1
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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24 '$input1' '$input2' > '$diff_file' || [ \$? -eq 1 ];
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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25 #if $report_format.report_format_select == 'html'
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26 sed -e 's/@@title@@/Diff report for "$input1.element_identifier" and "$input2.element_identifier"/g'
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27 -e 's/@@outputformat@@/'$report_format.output_format'/g'
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28 -e '/@@diffoutput@@/{r'$diff_file'' -e ';d}'
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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29 '$__tool_directory__/template.html' > '$html_file'
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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30 #end if
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31 ]]>
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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32 </command>
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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33 <inputs>
2
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34 <param name="input1" type="data" format="txt" label="First input file"/>
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35 <param name="input2" type="data" format="txt" label="Second input file"/>
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36 <conditional name="report_format">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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37 <param name="report_format_select" type="select" label="Choose a report format">
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38 <option value="txt_lines">Text file, line-by-line (-u)</option>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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39 <option value="txt_columns">Text file, side-by-side (-y)</option>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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40 <option value="html">Generates an HTML report to visualize the differences</option>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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41 </param>
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42 <when value="txt_lines">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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43 <param argument="--unified" type="integer" min="0" value="3" label="Output this amount of lines of unified context"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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44 </when>
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45 <when value="txt_columns"/>
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46 <when value="html">
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47 <param argument="--unified" type="integer" min="0" value="3" label="Output this amount of lines of unified context"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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48 <param name="output_format" type="select" label="Choose report output format" help="Displays the differences in the report using the selected format. Either line by line or side by side.">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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49 <option value="side-by-side">Side by side</option>
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50 <option value="line-by-line">Line by line</option>
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51 </param>
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52 </when>
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53 </conditional>
0
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54 </inputs>
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55 <outputs>
2
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56 <data format="txt" name="diff_file" from_work_dir="output.txt" label="${tool.name} on ${on_string}: Raw Output"/>
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57 <data format="html" name="html_file" from_work_dir="output.html" label="${tool.name} on ${on_string}: Html Report">
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58 <filter>report_format['report_format_select'] == 'html'</filter>
1
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59 </data>
0
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60 </outputs>
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61 <tests>
1
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62 <test expect_exit_code="0" expect_failure="false" expect_num_outputs="1">
2
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63 <param name="input1" value="file1.txt"/>
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64 <param name="input2" value="file1.txt"/>
4
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65 <conditional name="report_format">
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66 <param name="report_format_select" value="txt_lines"/>
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67 </conditional>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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68 <output name="diff_file">
0
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69 <assert_contents>
2
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70 <has_n_lines n="0"/>
0
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71 </assert_contents>
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72 </output>
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73 </test>
4
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74 <test expect_exit_code="0" expect_failure="false" expect_num_outputs="1">
2
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75 <param name="input1" value="file1.txt"/>
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76 <param name="input2" value="file2.txt"/>
4
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77 <conditional name="report_format">
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78 <param name="report_format_select" value="txt_lines"/>
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79 </conditional>
1
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80 <output name="diff_file">
0
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81 <assert_contents>
2
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82 <has_n_lines n="5"/>
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83 <has_line line=" a"/>
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84 <has_line line="+b"/>
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85 </assert_contents>
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86 </output>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
87 </test>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
88 <test expect_exit_code="0" expect_failure="false" expect_num_outputs="2">
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
89 <param name="input1" value="file1.txt"/>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
90 <param name="input2" value="file2.txt"/>
4
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
parents: 3
diff changeset
91 <conditional name="report_format">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
parents: 3
diff changeset
92 <param name="report_format_select" value="html"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
parents: 3
diff changeset
93 </conditional>
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
94 <output name="html_file">
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
95 <assert_contents>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
96 <has_text text="!DOCTYPE html"/>
0
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
bgruening
parents:
diff changeset
97 </assert_contents>
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
bgruening
parents:
diff changeset
98 </output>
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
bgruening
parents:
diff changeset
99 </test>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
parents: 0
diff changeset
100 <test expect_exit_code="0" expect_failure="false" expect_num_outputs="2">
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
101 <param name="input1" value="file1.txt"/>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
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diff changeset
102 <param name="input2" value="file2.txt"/>
4
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
parents: 3
diff changeset
103 <conditional name="report_format">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
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diff changeset
104 <param name="report_format_select" value="html"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
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diff changeset
105 <param name="output_format" value="side-by-side"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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diff changeset
106 </conditional>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
parents: 0
diff changeset
107 <output name="html_file">
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
parents: 0
diff changeset
108 <assert_contents>
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
109 <has_text text="!DOCTYPE html"/>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
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diff changeset
110 <has_text text="side-by-side"/>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
parents: 0
diff changeset
111 </assert_contents>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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112 </output>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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113 </test>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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114 <test expect_exit_code="0" expect_failure="false" expect_num_outputs="2">
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
parents: 1
diff changeset
115 <param name="input1" value="file1.txt"/>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
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diff changeset
116 <param name="input2" value="file2.txt"/>
4
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
bgruening
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diff changeset
117 <conditional name="report_format">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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118 <param name="report_format_select" value="html"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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119 <param name="output_format" value="line-by-line"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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120 </conditional>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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121 <output name="html_file">
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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122 <assert_contents>
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
bgruening
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diff changeset
123 <has_text text="!DOCTYPE html"/>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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124 <has_text text="line-by-line"/>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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125 </assert_contents>
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126 </output>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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127 </test>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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128 <test expect_exit_code="0" expect_failure="false" expect_num_outputs="2">
4
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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129 <param name="input1" value="file3.txt"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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130 <param name="input2" value="file3.txt"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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131 <conditional name="report_format">
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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132 <param name="report_format_select" value="html"/>
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133 <param name="output_format" value="side-by-side"/>
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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134 </conditional>
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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135 <output name="diff_file">
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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136 <assert_contents>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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137 <has_n_lines n="0"/>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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138 </assert_contents>
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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139 </output>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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parents: 0
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140 <output name="html_file">
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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diff changeset
141 <assert_contents>
2
1fa50ddb7bff "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 04afacfdfc505fb74219d0e6124afdce61e2ad8f"
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142 <has_text text="!DOCTYPE html"/>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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143 </assert_contents>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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144 </output>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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145 </test>
0
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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146 </tests>
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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147 <help><![CDATA[
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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148 .. class:: infomark
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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149
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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150 **Purpose**
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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151
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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152 The **diff** utility is a data comparison tool that calculates and displays the differences between two files.
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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153
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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154 Unlike edit distance notions used for other purposes, diff is line-oriented rather than character-oriented, but it is like Levenshtein distance in that it tries to determine the smallest set of deletions and insertions to create one file from the other.
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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155
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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diff changeset
156 The diff command displays the changes made in a standard format, such that both humans and machines can understand the changes and apply them: given one file and the changes, the other file can be created.
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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157
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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158 .. class:: infomark
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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159
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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160 **Input**
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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161
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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162 Two text files to be checked for differences line by line.
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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163
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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164 .. class:: infomark
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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165
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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166 **Output**
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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167
1
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168 A *text file*, either:
0
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169
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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170 - containing the lines differences in **unified format** (*unidiff*),
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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171
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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172 - or an **empty** file if the two input files are the same.
1
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173
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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174 An **optional** *HTML report* with a friendlier visual representation of the differences.
0
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175 ]]>
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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176 </help>
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177 <citations>
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178 <citation type="bibtex">
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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179 @misc{gnudiffutils,
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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180 author = {The Free Software Foundation (FSF), Inc},
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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181 year = {2017},
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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182 title = {diff (GNU diffutils)},
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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183 publisher = {The Free Software Foundation (FSF), Inc},
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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184 url = {http://www.gnu.org/software/diffutils/},
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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185 }
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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186 </citation>
1
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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187 <citation type="bibtex">
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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188 @misc{diff2html,
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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189 author = {Rodrigo Fernandes},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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190 year = {2014},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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191 title = {Pretty diff to html javascript library (diff2html)},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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192 publisher = {Github},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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193 url = {https://github.com/rtfpessoa/diff2html},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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194 }
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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195 </citation>
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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196 <citation type="bibtex">
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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197 @misc{sed,
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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198 author = {The Free Software Foundation (FSF), Inc},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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199 year = {2017},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
bgruening
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200 title = {sed (GNU sed)},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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201 publisher = {The Free Software Foundation (FSF), Inc},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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202 url = {http://www.gnu.org/software/sed/},
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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203 }
6cc7ec66d73e "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit d1ef0f3da4118bf352c5acf720f277fc5ef07665"
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204 </citation>
0
50b949ec59a7 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 9b11cc5751c0931172d00799b246fcbd63660311"
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205 </citations>
4
07a800aeafa0 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diff commit 1a6c4a793ef68a43de93316523c1cd9196d80b73
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206 </tool>