Mercurial > repos > bgruening > deeptools_plot_pca

comparison plotPCA.xml @ 11:f173cc2d28f9 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
author bgruening
date Mon, 25 Jan 2016 14:12:29 -0500
parents 39b7bb209165
children 0a198e327cc1
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10:7a9ee42ca6e6 11:f173cc2d28f9
1 <tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0"> 1 <tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0">
2 <description>generate a principal component analysis (PCA) plot from multiBamCoverage or multiBigwigSummary output</description> 2 <description>generate a principal component analysis (PCA) plot from multiBamSummary or multiBigwigSummary output</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">plotPCA</token> 4 <token name="@BINARY@">plotPCA</token>
5 <import>deepTools_macros.xml</import> 5 <import>deepTools_macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
13 --plotFile "$outFileName" 13 --plotFile "$outFileName"
14 --plotFileFormat "$outFileFormat" 14 --plotFileFormat "$outFileFormat"
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the multiBamCoverage or multiBigwigSummary tools"/> 18 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the multiBamSummary or multiBigwigSummary tools"/>
19 <expand macro="input_image_file_format" /> 19 <expand macro="input_image_file_format" />
20 <expand macro="plotTitle" /> 20 <expand macro="plotTitle" />
21 </inputs> 21 </inputs>
22 <outputs> 22 <outputs>
23 <expand macro="output_image_file_format_not_nested" /> 23 <expand macro="output_image_file_format_not_nested" />
24 </outputs> 24 </outputs>
25 <tests> 25 <tests>
26 <test> 26 <test>
27 <param name="corData" value="multiBamCoverage_result2.npz" ftype="deeptools_coverage_matrix" /> 27 <param name="corData" value="multiBamSummary_result2.npz" ftype="deeptools_coverage_matrix" />
28 <param name="plotTitle" value="Test Plot" /> 28 <param name="plotTitle" value="Test Plot" />
29 <param name="outFileFormat" value="png" /> 29 <param name="outFileFormat" value="png" />
30 <output name="outFileName" file="plotPCA_result1.png" ftpye="png" compare="sim_size" delta="100" /> 30 <output name="outFileName" file="plotPCA_result1.png" ftpye="png" compare="sim_size" delta="100" />
31 </test> 31 </test>
32 </tests> 32 </tests>
34 <![CDATA[ 34 <![CDATA[
35 35
36 **What it does** 36 **What it does**
37 37
38 Tool for generating a principal component analysis (PCA) 38 Tool for generating a principal component analysis (PCA)
39 plot from multiBamCoverage or multiBigwigSummary output. 39 plot from multiBamSummary or multiBigwigSummary output.
40 40
41 ----- 41 -----
42 42
43 @REFERENCES@ 43 @REFERENCES@
44 ]]> 44 ]]>