Mercurial > repos > bgruening > deeptools_plot_pca

comparison plotPCA.xml @ 0:a6fdea25d41f draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
author bgruening
date Wed, 16 Dec 2015 16:41:08 -0500
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1 <tool id="deeptools_plot_pca" name="plotPCA" version="@WRAPPER_VERSION@.0">
2 <description>generating a principal component analysis (PCA) plot from bamCorrelate or bigwigCorrelate output</description>
3 <macros>
4 <token name="@BINARY@">plotPCA</token>
5 <import>deepTools_macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <command>
9 <![CDATA[
10 @BINARY@
11 --corData "$corData"
12 --plotTitle "$plotTitle"
13 --plotFile "$outFileName"
14 --plotFileFormat "$outFileFormat"
15 ]]>
16 </command>
17 <inputs>
18 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the bamCorrelate tool"/>
19 <expand macro="image_file_format" />
20 <expand macro="plotTitle" />
21 </inputs>
22 <outputs>
23 <expand macro="output_image_file_format" />
24 </outputs>
25 <tests>
26 <test>
27 <param name="corData" value="bamCorrelate_result2.npz" ftype="deeptools_coverage_matrix" />
28 <param name="plotTitle" value="Test Plot" />
29 <param name="outFileFormat" value="png" />
30 <output name="outFileName" file="plotPCA_result1.png" compare="sim_size" delta="100" />
31 </test>
32 </tests>
33 <help>
34 <![CDATA[
35
36 **What it does**
37
38 Tool for generating a principal component analysis (PCA)
39 plot from bamCorrelate or bigwigCorrelate output.
40
41 -----
42
43 @REFERENCES@
44 ]]>
45 </help>
46 <expand macro="citations" />
47 </tool>