Mercurial > repos > bgruening > deeptools_plot_pca

comparison plotPCA.xml @ 3:1f9a7501bd38 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit a92b8557d0985038d24daaab2996fbf8e4cd323f
author bgruening
date Mon, 21 Dec 2015 07:25:04 -0500
parents a6fdea25d41f
children c74dd623b281
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2:828ecc09ca38 3:1f9a7501bd38
14 --plotFileFormat "$outFileFormat" 14 --plotFileFormat "$outFileFormat"
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the bamCorrelate tool"/> 18 <param name="corData" format="deeptools_coverage_matrix" type="data" label="Matrix file from the bamCorrelate tool"/>
19 <expand macro="image_file_format" /> 19 <expand macro="input_image_file_format" />
20 <expand macro="plotTitle" /> 20 <expand macro="plotTitle" />
21 </inputs> 21 </inputs>
22 <outputs> 22 <outputs>
23 <expand macro="output_image_file_format" /> 23 <expand macro="output_image_file_format_not_nested" />
24 </outputs> 24 </outputs>
25 <tests> 25 <tests>
26 <test> 26 <test>
27 <param name="corData" value="bamCorrelate_result2.npz" ftype="deeptools_coverage_matrix" /> 27 <param name="corData" value="bamCorrelate_result2.npz" ftype="deeptools_coverage_matrix" />
28 <param name="plotTitle" value="Test Plot" /> 28 <param name="plotTitle" value="Test Plot" />
29 <param name="outFileFormat" value="png" /> 29 <param name="outFileFormat" value="png" />
30 <output name="outFileName" file="plotPCA_result1.png" compare="sim_size" delta="100" /> 30 <output name="outFileName" file="plotPCA_result1.png" ftpye="png" compare="sim_size" delta="100" />
31 </test> 31 </test>
32 </tests> 32 </tests>
33 <help> 33 <help>
34 <![CDATA[ 34 <![CDATA[
35 35