--- a/plotHeatmap.xml	Thu Aug 23 04:03:11 2018 -0400
+++ b/plotHeatmap.xml	Tue Feb 19 04:34:43 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="deeptools_plot_heatmap" name="plotHeatmap" version="@WRAPPER_VERSION@.0" profile="18.01">
+<tool id="deeptools_plot_heatmap" name="plotHeatmap" version="@WRAPPER_VERSION@.1" profile="18.01">
     <description>creates a heatmap for score distributions across genomic regions</description>
     <macros>
         <token name="@BINARY@">plotHeatmap</token>
@@ -42,6 +42,8 @@
                     --averageTypeSummaryPlot '$advancedOpt.averageTypeSummaryPlot'
                 #end if
 
+                --plotType '$advancedOpt.plotType'
+
                 #if str($advancedOpt.missingDataColor.value) != "None":
                     --missingDataColor '$advancedOpt.missingDataColor'
                 #end if
@@ -87,17 +89,19 @@
                 --refPointLabel '$advancedOpt.referencePointLabel'
 
                 #if $advancedOpt.samplesLabel and str($advancedOpt.samplesLabel).strip() != "":
-                    --samplesLabel '$advancedOpt.samplesLabel'
+                    --samplesLabel $advancedOpt.samplesLabel
                 #end if
 
                 #if $advancedOpt.regionsLabel and str($advancedOpt.regionsLabel).strip() != "":
-                    --regionsLabel '$advancedOpt.regionsLabel'
+                    --regionsLabel $advancedOpt.regionsLabel
                 #end if
 
                 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "":
                     --plotTitle '$advancedOpt.plotTitle'
                 #end if
 
+                --legendLocation '$advancedOpt.legendLocation'
+
                 --labelRotation '$advancedOpt.labelRotation'
 
                 $advancedOpt.perGroup
@@ -136,7 +140,12 @@
                     <option value="sum">sum</option>
                     <option value="std">std</option>
                 </param>
-
+                <param argument="--plotType" type="select" label="Type of summary plot">
+                    <option value="lines">plot the profile line based on the statistic selected above.</option>
+                    <option value="fill">fills the region between zero and the profile.</option>
+                    <option value="se">color the region between the profile and the standard error.</option>
+                    <option value="std">color the region between the profile and the standard deviation.</option>
+                </param>
                 <param argument="--missingDataColor" type="text" value="black" optional="true" label="Missing data color"
                     help="If 'Represent missing data as zero' is not set, such cases will be colored in black by default.
                     By using this parameter a different color can be set. A value between 0 and 1 will be used for a gray scale (black is 0).
@@ -206,6 +215,7 @@
                           For example, label_1 &quot;label 2&quot;" />
 
                 <expand macro="plotTitle" />
+                <expand macro="legendLocation" />
                 <expand macro="labelRotation" />
                 <param argument="--perGroup" type="boolean" truevalue="--perGroup" falsevalue=""
                     label="Make one plot per group of regions"