Mercurial > repos > bgruening > deeptools_plot_coverage

comparison plotCoverage.xml @ 25:bed83fb37252 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit b5fc4073c884a2d6a4092ea85150db1971010f28
author bgruening
date Sun, 14 May 2017 18:33:15 -0400
parents 5f1ab4c4f459
children 79032c0e6423
comparison
equal deleted inserted replaced
24:5ca953cab23b 25:bed83fb37252
36 36
37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": 37 #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "":
38 --plotTitle '$advancedOpt.plotTitle' 38 --plotTitle '$advancedOpt.plotTitle'
39 #end if 39 #end if
40 @ADVANCED_OPTS_READ_PROCESSING@ 40 @ADVANCED_OPTS_READ_PROCESSING@
41 @PLOTWIDTHHEIGHT@
41 @blacklist@ 42 @blacklist@
42 #end if 43 #end if
43 44
44 ]]> 45 ]]>
45 </command> 46 </command>
46 <inputs> 47 <inputs>
47 48
48 <expand macro="multiple_input_bams" /> 49 <expand macro="multiple_input_bams" MIN="1"/>
49 50
50 <conditional name="advancedOpt"> 51 <conditional name="advancedOpt">
51 <param name="showAdvancedOpt" type="select" label="Show advanced options" > 52 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
52 <option value="no" selected="true">no</option> 53 <option value="no" selected="true">no</option>
53 <option value="yes">yes</option> 54 <option value="yes">yes</option>
55 <when value="no" /> 56 <when value="no" />
56 <when value="yes"> 57 <when value="yes">
57 <param argument="--numberOfSamples" type="integer" value="100000" min="1" 58 <param argument="--numberOfSamples" type="integer" value="100000" min="1"
58 label="Number of samples" 59 label="Number of samples"
59 help="Number of samples taken from the genome to compute the scaling factors."/> 60 help="Number of samples taken from the genome to compute the scaling factors."/>
61 <expand macro="plotWidthHeight" PLOTWIDTH="15.0" PLOTHEIGHT="5.0" />
60 <expand macro="region_limit_operation" /> 62 <expand macro="region_limit_operation" />
61 <expand macro="read_processing_options" /> 63 <expand macro="read_processing_options" />
62 <expand macro="skipZeros" /> 64 <expand macro="skipZeros" />
63 <expand macro="plotTitle" /> 65 <expand macro="plotTitle" />
64 <expand macro="blacklist" /> 66 <expand macro="blacklist" />