Mercurial > repos > bgruening > deeptools_plot_coverage

comparison plotCoverage.xml @ 3:89dc332a851a draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit ae00542731230245927953207977833a0f020b69
author bgruening
date Wed, 23 Dec 2015 07:30:39 -0500
parents 3bfd8cde1b76
children 1a6309cecf71
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2:3bfd8cde1b76 3:89dc332a851a
1 <tool id="deeptools_plot_coverage" name="plotCoverage" version="@WRAPPER_VERSION@.0"> 1 <tool id="deeptools_plot_coverage" name="plotCoverage" version="@WRAPPER_VERSION@.0">
2 <description>creates a heatmap of correlation scores between different samples </description> 2 <description>plots a histogram of coverage on genomic regions </description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">plotCoverage</token> 4 <token name="@BINARY@">plotCoverage</token>
5 <import>deepTools_macros.xml</import> 5 <import>deepTools_macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
20 --bamfiles '#echo "' '".join($files)#' 20 --bamfiles '#echo "' '".join($files)#'
21 --labels '#echo "' '".join($labels)#' 21 --labels '#echo "' '".join($labels)#'
22 --plotFileFormat "$outFileFormat" 22 --plotFileFormat "$outFileFormat"
23 23
24 #if $outRawCounts: 24 #if $outRawCounts:
25 --outRawCounts '$outFileRawCounts' 25 --outRawCounts '$outFileRawCounts'
26 #end if 26 #end if
27 27
28 #if $advancedOpt.showAdvancedOpt == "yes": 28 #if $advancedOpt.showAdvancedOpt == "yes":
29 --numberOfSamples '$advancedOpt.numberOfSamples' 29 --numberOfSamples '$advancedOpt.numberOfSamples'
30 $advancedOpt.skipZeros 30 $advancedOpt.skipZeros