Mercurial > repos > bgruening > deeptools_plot_correlation

comparison plotCorrelation.xml @ 35:bf98fa19b73a draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754
author bgruening
date Thu, 05 Apr 2018 10:40:20 -0400
parents f1518335ac27
children 659b08d0c4b1
comparison
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34:3de1d0d2d628 35:bf98fa19b73a
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 @BINARY@ 10 @BINARY@
11 --corData "$corData" 11 --corData '$corData'
12 --plotFile "$outFileName" 12 --plotFile '$outFileName'
13 --corMethod "$corMethod" 13 --corMethod '$corMethod'
14 --whatToPlot "$plotting_type.whatToPlot" 14 --whatToPlot '$plotting_type.whatToPlot'
15 #if str($plotting_type.whatToPlot) == 'heatmap': 15 #if str($plotting_type.whatToPlot) == 'heatmap':
16 @HEATMAP_OPTIONS@ 16 @HEATMAP_OPTIONS@
17 --plotWidth $plotting_type.plotWidth 17 --plotWidth $plotting_type.plotWidth
18 --plotHeight $plotting_type.plotHeight 18 --plotHeight $plotting_type.plotHeight
19 #else: 19 #else:
22 --maxRange '$plotting_type.maxRange' 22 --maxRange '$plotting_type.maxRange'
23 #end if 23 #end if
24 $plotting_type.log1p 24 $plotting_type.log1p
25 #end if 25 #end if
26 $skipZeros 26 $skipZeros
27 --plotFileFormat "$outFileFormat" 27 --plotFileFormat '$outFileFormat'
28 $removeOutliers 28 $removeOutliers
29 #if $outFileCorMatrix: 29 #if $outFileCorMatrix:
30 --outFileCorMatrix "$matrix" 30 --outFileCorMatrix '$matrix'
31 #end if 31 #end if
32 32
33 ]]> 33 ]]>
34 </command> 34 </command>
35 <inputs> 35 <inputs>