Mercurial > repos > bgruening > deeptools_bam_coverage

comparison bamCoverage.xml @ 36:e57332b94d4f draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3024062b63fdc502b46e4f328083493c2274182a
author bgruening
date Thu, 23 Aug 2018 04:02:14 -0400
parents 6a5dfb2c0c60
children 0d2ba04b8261
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35:7e55c0415e71 36:e57332b94d4f
39 #end if 39 #end if
40 40
41 #if str($region).strip() != '': 41 #if str($region).strip() != '':
42 --region '$region' 42 --region '$region'
43 #end if 43 #end if
44 $exactScaling
44 45
45 #if $advancedOpt.showAdvancedOpt == "yes": 46 #if $advancedOpt.showAdvancedOpt == "yes":
46 #if str($advancedOpt.scaleFactor).strip() != '': 47 #if str($advancedOpt.scaleFactor).strip() != '':
47 --scaleFactor $advancedOpt.scaleFactor 48 --scaleFactor $advancedOpt.scaleFactor
48 #end if 49 #end if
99 <param name="outFileFormat" type="select" label="Coverage file format"> 100 <param name="outFileFormat" type="select" label="Coverage file format">
100 <option value="bigwig" selected="true">bigwig</option> 101 <option value="bigwig" selected="true">bigwig</option>
101 <option value="bedgraph">bedgraph</option> 102 <option value="bedgraph">bedgraph</option>
102 </param> 103 </param>
103 104
105 <expand macro="exactScaling" />
104 <expand macro="region_limit_operation" /> 106 <expand macro="region_limit_operation" />
105 107
106 <conditional name="advancedOpt"> 108 <conditional name="advancedOpt">
107 <param name="showAdvancedOpt" type="select" label="Show advanced options" > 109 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
108 <option value="no" selected="true">no</option> 110 <option value="no" selected="true">no</option>