Mercurial > repos > bgruening > deeptools_alignmentsieve

diff alignmentSieve.xml @ 9:5e3816edfd1b draft default tip

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 810c1359b884661d3f5c7372be0f0f88c859a3b9
author bgruening
date Thu, 01 Jun 2023 10:13:21 +0000
parents 28b2aa3ac6a6
children
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--- a/alignmentSieve.xml	Fri Feb 11 10:07:30 2022 +0000
+++ b/alignmentSieve.xml	Thu Jun 01 10:13:21 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="deeptools_alignmentsieve" name="alignmentsieve" version="@WRAPPER_VERSION@.0">
+<tool id="deeptools_alignmentsieve" name="alignmentsieve" version="@TOOL_VERSION@+galaxy0" profile="@GALAXY_VERSION@">
     <description>Filter BAM/CRAM files according to specified parameters</description>
     <macros>
         <token name="@BINARY@">alignmentSieve</token>
@@ -136,7 +136,7 @@
             <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
             <param name="minMappingQuality" value="10" />
             <param name="filterMetrics" value="True" />
-            <output name="outFile" file="alignmentSieve.bam" ftype="bam" />
+            <output name="outFile" file="alignmentSieve.bam" ftype="bam" lines_diff="1" />
             <output name="filterMetricsFile" file="alignmentSieve.txt" ftype="tabular" />
         </test>
         <test>
@@ -150,13 +150,13 @@
             <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
             <param name="minMappingQuality" value="10" />
             <param name="shift" value="1 -2 3 -4" />
-            <output name="outFile" file="alignmentSieve2.bam" ftype="bam" />
+            <output name="outFile" file="alignmentSieve2.bam" ftype="bam" lines_diff="2" />
         </test>
         <test>
             <param name="bamfile" value="paired_chr2L.cram" ftype="cram" />
             <param name="minMappingQuality" value="10" />
             <param name="shift" value="1 -2 3 -4" />
-            <output name="outFile" file="alignmentSieve3.bam" ftype="bam" />
+            <output name="outFile" file="alignmentSieve3.bam" ftype="bam" lines_diff="2" />
         </test>
     </tests>