Mercurial > repos > bgruening > deeptools_alignmentsieve

diff alignmentSieve.xml @ 2:28b2aa3ac6a6 draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 5a01e3a370130f32a82d5436504371ed95be1754
author bgruening
date Thu, 05 Apr 2018 10:44:59 -0400
parents 0d0b4fb6eec2
children 5e3816edfd1b
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line diff
--- a/alignmentSieve.xml	Fri Mar 02 16:29:10 2018 -0500
+++ b/alignmentSieve.xml	Thu Apr 05 10:44:59 2018 -0400
@@ -75,7 +75,7 @@
         #if $BED:
             --BED
             -o '$outFile'
-        #elif str($shift) != "":
+        #elif str($shift) != "" or $ATACshift:
             -o foo.bam &&
             samtools sort -o '$outFile' -T foo.tmp -@ "\${GALAXY_SLOTS:-4}" foo.bam &&
             rm foo.bam