Mercurial > repos > bgruening > deeptools

diff deepTools_macros.xml @ 75:aa76a7fa6f82 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 3bc1d1c6f4e28ac7ff8df79fe4e3f00a195938e6-dirty
author iuc
date Tue, 22 Sep 2015 13:18:01 -0400
parents bf8a2284232c
children d54881c558b8
line wrap: on
line diff
--- a/deepTools_macros.xml	Mon Sep 21 13:15:28 2015 -0400
+++ b/deepTools_macros.xml	Tue Sep 22 13:18:01 2015 -0400
@@ -215,7 +215,7 @@
         #set labels=[]
         #for $counter, $bamfile in enumerate($bamfiles):
             ln -s "${bamfile}" "./${counter}.bam" &&
-            ln -s "${bamfile}" "./${counter}.bam.bai" &&
+            ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" &&
             #silent $files.append('%s.bam' % $counter)
             #silent $labels.append("'%s'" % ($bamfile.display_name))
         #end for