Mercurial > repos > bgruening > deeptools

diff heatmapper.xml @ 65:9bee2c86eeb1 draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit ab1ab06323702186cf0c883d5774720cbb822cb5-dirty
author iuc
date Mon, 25 May 2015 05:16:10 -0400
parents f3140d17939e
children 1dbd76a58d8b
line wrap: on
line diff
--- a/heatmapper.xml	Sun Mar 22 13:02:33 2015 -0400
+++ b/heatmapper.xml	Mon May 25 05:16:10 2015 -0400
@@ -1,11 +1,10 @@
 <tool id="deeptools_heatmapper" name="heatmapper" version="@WRAPPER_VERSION@.0">
     <description>creates a heatmap for a score associated to genomic regions</description>
-    <expand macro="requirements"/>
-    <expand macro="stdio" />
     <macros>
         <token name="@BINARY@">heatmapper</token>
         <import>deepTools_macros.xml</import>
     </macros>
+    <expand macro="requirements"/>
     <command>
 <![CDATA[
         heatmapper
@@ -76,7 +75,7 @@
             --refPointLabel '$advancedOpt.referencePointLabel'
             --regionsLabel '$advancedOpt.regionsLabel'
 
-            #if str($advancedOpt.plotTitle.value) != "None":
+            #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "":
                 --plotTitle '$advancedOpt.plotTitle'
             #end if
 
@@ -177,8 +176,7 @@
                         </valid>
                     </sanitizer>
                 </param>
-                <param name="plotTitle" type="text" value="" size="30"
-                    label="Title of the plot" help="Title of the plot, to be printed on top of the generated image. Leave blank for no title. (--plotTitle)" />
+                <expand macro="plotTitle" />
                 <param name="onePlotPerGroup" type="boolean" truevalue="--onePlotPerGroup" falsevalue="" 
                     label="Do one plot per group" 
                     help="When computeMatrix was used on more than one group of genes, the average plots for all the groups will be drawn in one panel by default. If this option is set, each group will get its own plot, stacked on top of each other."/>
@@ -194,7 +192,7 @@
     </outputs>
     <tests>
         <test>
-            <param name="matrixFile" value="computeMatrix_result1.gz" ftype="bgzip" />
+            <param name="matrixFile" value="computeMatrix_result1.gz" ftype="deeptools_matrix" />
             <output name="outFileName" file="heatmapper_result1.png" ftype="png" compare="sim_size" delta="100" />
         </test>
     </tests>