diff deepTools_macros.xml @ 35:7766dfcd2455 draft

Uploaded
author bgruening
date Thu, 30 Jan 2014 19:16:15 -0500
parents 934b9fccabd4
children ea2f64efe70d
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line diff
--- a/deepTools_macros.xml	Wed Jan 29 19:20:42 2014 -0500
+++ b/deepTools_macros.xml	Thu Jan 30 19:16:15 2014 -0500
@@ -44,7 +44,7 @@
             <requirement type="package" >samtools</requirement>
             <requirement type="package" >deepTools</requirement>
             <requirement type="package" >ucsc_tools</requirement>
-            <requirement type="package" version="1.5.4_570648e1d7a44583a72852f2bd2bf408f76f8f6a">deepTools</requirement>
+            <requirement type="package" version="1.5.4_b2b025a382f00f05c46cabc16d2cbe90dbb5d63a">deepTools</requirement>
             <requirement type="package" version="0.1">ucsc_tools</requirement>
             <requirement type="package" version="1.7.1">numpy</requirement>
             <requirement type="package" version="0.7.7">pysam</requirement>
@@ -148,10 +148,10 @@
                 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded. 
                     Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. 
                     See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes.">
-                <option value="2150570000">mm9</option>
-                <option value="2451960000">hg19</option>
-                <option value="121400000">dm3</option>
-                <option value="93260000">ce10</option>
+                <option value="2150570000">mm9 (2150570000)</option>
+                <option value="2451960000">hg19 (2451960000)</option>
+                <option value="121400000">dm3 (121400000)</option>
+                <option value="93260000">ce10 (93260000)</option>
                 <option value="specific">user specified</option>
             </param>
             <when value="specific">