Mercurial > repos > bgruening > deeptools
diff correctGCBias.xml @ 5:1f312af2f8db draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 06 Aug 2013 08:20:47 -0400 |
| parents | 21d563d5f2b2 |
| children | c5847db0cb41 |
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--- a/correctGCBias.xml Mon Aug 05 11:36:11 2013 -0400 +++ b/correctGCBias.xml Tue Aug 06 08:20:47 2013 -0400 @@ -1,6 +1,5 @@ <tool id="correctGCBias" name="correctGCBias" version="1.0.1"> - <description> - </description> + <description>use the output from computeGCBias to obtain corrected sample files</description> <requirements> <requirement type="package" version="1.5.1_59e067cce039cb93add04823c9f51cab202f8c2b">deepTools</requirement> <requirement type="package" version="0.1">ucsc_tools</requirement> @@ -106,14 +105,13 @@ **What it does** -Computes the GC bias ussing Benjamini's method [citation]. The resulting GC -bias can later be used to plot the bias or to correct the bias. - +This tool requires the output from computeGCBias to correct the given BAM files according to the method proposed by Benjamini and Speed (2012). Nucleic Acids Res. +The resulting BAM files can be used in any downstream analyses, but be aware that you should not filter out duplicates from here on. ----- .. class:: infomark -Please acknowledge that this tool **is still in development** and we will be very happy to receive feedback from the users. If you run into any trouble please sent an email to `Fidel Ramirez`_. +If you would like to give us feedback or you run into any trouble, please sent an email to deeptools@googlegroups.com This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.
