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comparison deepTools_macros.xml @ 73:bf8a2284232c draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit f720d773e34ad90d14d7cae77c1a0bb5d126102c-dirty
author iuc
date Fri, 18 Sep 2015 15:14:34 -0400
parents c56a8c021315
children aa76a7fa6f82
comparison
equal deleted inserted replaced
72:c56a8c021315 73:bf8a2284232c
59 label="Region of the genome to limit the operation to" 59 label="Region of the genome to limit the operation to"
60 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example "chr10" or "chr10:456700:891000". (--region)" /> 60 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example "chr10" or "chr10:456700:891000". (--region)" />
61 </xml> 61 </xml>
62 62
63 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> 63 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
64 <token name="@WRAPPER_VERSION@">1.5.10</token> 64 <token name="@WRAPPER_VERSION@">1.5.11</token>
65 <xml name="requirements"> 65 <xml name="requirements">
66 <requirements> 66 <requirements>
67 <requirement type="package" version="2.7">python</requirement> 67 <requirement type="package" version="2.7">python</requirement>
68 <requirement type="binary">@BINARY@</requirement> 68 <requirement type="binary">@BINARY@</requirement>
69 <requirement type="package" >deepTools</requirement> 69 <requirement type="package" >deepTools</requirement>
70 <requirement type="package" version="1.5.10">deepTools</requirement> 70 <requirement type="package" version="1.5.11">deepTools</requirement>
71 <yield /> 71 <yield />
72 </requirements> 72 </requirements>
73 <expand macro="stdio" /> 73 <expand macro="stdio" />
74 <version_command>@BINARY@ --version</version_command> 74 <version_command>@BINARY@ --version</version_command>
75 </xml> 75 </xml>
196 label="Bam file" multiple="true" 196 label="Bam file" multiple="true"
197 help="The BAM file must be sorted."/> 197 help="The BAM file must be sorted."/>
198 </xml> 198 </xml>
199 199
200 <xml name="multiple_input_bigwigs"> 200 <xml name="multiple_input_bigwigs">
201 <param name="bigwigfile" type="data" format="bigwig" multiple="True" 201 <param name="bigwigfiles" type="data" format="bigwig" multiple="True"
202 label="Bigwig file" 202 label="Bigwig file"
203 help="The Bigwig file must be sorted."/> 203 help="The Bigwig file must be sorted."/>
204 </xml> 204 </xml>
205 205
206 <xml name="plotTitle"> 206 <xml name="plotTitle">
224 224
225 <token name="@multiple_input_bigwigs@"> 225 <token name="@multiple_input_bigwigs@">
226 <![CDATA[ 226 <![CDATA[
227 #set files=[] 227 #set files=[]
228 #set labels=[] 228 #set labels=[]
229 #for $counter, $bigwig in enumerate($input_files): 229 #for $counter, $bigwig in enumerate($bigwigfiles):
230 ln -s "${bigwig}" "${counter}.bw" && 230 ln -s "${bigwig}" "${counter}.bw" &&
231 #silent $files.append('%s.bw' % $counter) 231 #silent $files.append('%s.bw' % $counter)
232 #silent $labels.append("'%s'" % ($bigwig.display_name)) 232 #silent $labels.append("'%s'" % ($bigwig.display_name))
233 #end for 233 #end for
234 ]]> 234 ]]>