Mercurial > repos > bgruening > deeptools

comparison tool_dependencies.xml @ 49:1d802a322244 draft

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Uploaded
author bgruening
date Wed, 10 Sep 2014 04:06:39 -0400
parents 72d1d7c68bd3
children 857a85571395
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48:72d1d7c68bd3 49:1d802a322244
55 </actions> 55 </actions>
56 </install> 56 </install>
57 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> 57 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
58 </package> 58 </package>
59 59
60 <package name="deepTools" version="1.5.8.2"> 60 <package name="deepTools" version="1.5.9.1">
61 <install version="1.0"> 61 <install version="1.0">
62 <actions> 62 <actions>
63 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> 63 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
64 <!-- populate the environment variables from the dependend repos --> 64 <!-- populate the environment variables from the dependend repos -->
65 <action type="set_environment_for_install"> 65 <action type="set_environment_for_install">
77 </repository> 77 </repository>
78 <repository changeset_revision="a983dc7c8103" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 78 <repository changeset_revision="a983dc7c8103" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
79 <package name="scipy" version="0.12.0" /> 79 <package name="scipy" version="0.12.0" />
80 </repository> 80 </repository>
81 </action> 81 </action>
82 <action type="shell_command">git reset --hard ae9c18b3b7e79d0d1077f636168ac24baeb7b184</action> 82 <action type="shell_command">git reset --hard 351890e3db9a443484c5c349791b7247163cc94f</action>
83 <action type="make_directory">$INSTALL_DIR/lib/python</action> 83 <action type="make_directory">$INSTALL_DIR/lib/python</action>
84 <action type="shell_command"> 84 <action type="shell_command">
85 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 85 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
86 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 86 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
87 </action> 87 </action>