Mercurial > repos > bgruening > data_manager_sylph_database
annotate tool-data/sylph_databases.loc.sample @ 0:2ea34d422df4 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
| author | bgruening | 
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| date | Fri, 23 May 2025 09:47:40 +0000 | 
| parents | |
| children | 
| rev | line source | 
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0
 
2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
1 #This is a tab separated file describing the location of StarAMR databases | 
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2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
2 #used for the StarAMR tool | 
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2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
3 # | 
| 
 
2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
4 #file has this format (white space characters are TAB characters) | 
| 
 
2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
5 # | 
| 
 
2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
6 #The columns are: | 
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2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
7 #value name path version | 
| 
 
2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
8 # | 
| 
 
2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
9 #For example | 
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2ea34d422df4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
 
bgruening 
parents:  
diff
changeset
 | 
10 #staramr_downloaded_20241004_resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502 ResFinder: tag 4.6.0, commit d1e607b, 2024-08-06 - PointFinder: tag 4.1.1, commit 694919f, 2024-08-08 - PlasmidFinder: commit 3e77502, 2024-03-07 (downloaded 20241004) /path/to/data | 
