Mercurial > repos > bgruening > data_manager_motus

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit 6ae189ed2bd62ea78fceb19d0d38ea4658b029e2
author bgruening
date Sat, 08 Feb 2025 20:40:31 +0000
parents 73c0eff7246d
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73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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1 <?xml version="1.0"?>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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2 <data_managers>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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3
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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4 <data_manager tool_file="data_manager/motus_db_fetcher.xml" id="motus_db_fetcher">
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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5 <data_table name="motus_db_versioned">
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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6 <output>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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7 <column name="value" />
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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8 <column name="version" />
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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9 <column name="name" />
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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10 <column name="path" output_ref="out_file" >
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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11 <move type="directory" relativize_symlinks="True">
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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12 <source>${path}</source>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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13 <!-- the /db_mOTU path is important since motus looks for a folder named like this -->
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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14 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">motus_database/${value}/db_mOTU</target>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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15 </move>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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16 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/motus_database/${value}/db_mOTU</value_translation>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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17 <value_translation type="function">abspath</value_translation>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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18 </column>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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19 </output>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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20 </data_table>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
parents:
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21 </data_manager>
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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22
73c0eff7246d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
bgruening
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23 </data_managers>