Mercurial > repos > bgruening > data_manager_diamond_database_builder

comparison data_manager_conf.xml @ 16:cd9e4ee63761 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_diamond_database_builder commit 75abf7d4b23ed7ae8abce80609d81b20bc882863"
author iuc
date Sun, 21 Mar 2021 12:07:05 +0000
parents 1b449216bf00
children 16642d2851a3
comparison
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15:971d21ac718e 16:cd9e4ee63761
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_diamond_database_builder.xml" id="diamond_database_builder" version="0.0.1"> 3 <data_manager tool_file="data_manager/data_manager_diamond_database_builder.xml" id="diamond_database_builder" version="0.0.3">
4 <data_table name="diamond_database"> 4 <data_table name="diamond_database">
5 <output> 5 <output>
6 <column name="value" /> 6 <column name="value" />
7 <column name="name" /> 7 <column name="name" />
8 <column name="db_path" output_ref="out_file" > 8 <column name="db_path" output_ref="out_file" >
9 <move type="directory" relativize_symlinks="True"> 9 <move type="directory" relativize_symlinks="True">
10 <!-- <source>${db_path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">diamond_database/${value}</target> 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">diamond_database/${value}</target>
12 </move> 11 </move>
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/diamond_database/${value}/${db_path}</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/diamond_database/${value}/${db_path}</value_translation>
14 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
15 </column> 14 </column>