Mercurial > repos > bgruening > cp_cellprofiler

comparison cellprofiler.xml @ 4:c8fa4617f9aa draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 705efdd46afce6cbb44c87d8249566ebd528b230"
author bgruening
date Fri, 29 May 2020 21:40:02 +0000
parents 74ee5f19a155
children 068d26b8f1f6
comparison
equal deleted inserted replaced
3:74ee5f19a155 4:c8fa4617f9aa
206 </test> 206 </test>
207 207
208 </tests> 208 </tests>
209 209
210 <help> 210 <help>
211 This tool runs a CellProfiler @CP_VERSION@ pipeline file. 211 <![CDATA[
212 212
213 *** Parameters *** 213 .. class:: infomark
214 214
215 images: multi-select image files 215 **What it does**
216 216
217 pipeline: CellProfiler pipeline file(.cppipe) file. 217 This is the last tool in a CellProfiler workflow and runs a CellProfiler @CP_VERSION@ pipeline file on a collection of images.
218 218
219 *** Note *** 219
220 220 .. class:: infomark
221 Only version @CP_VERSION@ pipeline can be run, other versions may cause problems. 221
222 222 **Input**
223
224 - Collection of images.
225
226 - Existing CellProfiler pipeline file *(.cppipe)* or generated by linking CellProfiler tools.
227
228 .. class:: infomark
229
230 **Output**
231
232 - Images if the tool *SaveImages* was included in the workflow.
233 - The features selected if the tool *ExportToSpreadsheet* was included in the workflow.
234
235 .. class:: warningmark
236
237 **IMPORTANT**
238
239 Only the pipelines generated with the version @CP_VERSION@ of CellProfiler can be run, other versions may cause problems.
240 ]]>
223 </help> 241 </help>
224 <expand macro="citations" /> 242 <expand macro="citations" />
225 </tool> 243 </tool>