Mercurial > repos > bgruening > bedtools_test_bag

comparison windowBed.xml @ 12:c782e0edc4f1 draft default tip

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author bgruening
date Thu, 19 Jun 2014 10:12:00 -0400
parents e526617a6bb9
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11:e526617a6bb9 12:c782e0edc4f1
1 <tool id="bedtools_windowbed" name="WindowBed" version="0.2.0"> 1 <tool id="bedtools_windowbed" name="WindowBed" version="@WRAPPER_VERSION@.0">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
66 **What it does** 66 **What it does**
67 67
68 Similar to bedtools intersect, window searches for overlapping features in A and B. However, window adds a specified number (1000, by default) of base pairs upstream and downstream of each feature in A. In effect, this allows features in B that are “near” features in A to be detected. 68 Similar to bedtools intersect, window searches for overlapping features in A and B. However, window adds a specified number (1000, by default) of base pairs upstream and downstream of each feature in A. In effect, this allows features in B that are “near” features in A to be detected.
69 69
70 .. image:: $PATH_TO_IMAGES/window-glyph.png 70 .. image:: $PATH_TO_IMAGES/window-glyph.png
71
71 @REFERENCES@ 72 @REFERENCES@
72 </help> 73 </help>
73 </tool> 74 </tool>