Mercurial > repos > bgruening > bedtools_test_bag

comparison bamToBed.xml @ 12:c782e0edc4f1 draft default tip

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author bgruening
date Thu, 19 Jun 2014 10:12:00 -0400
parents e526617a6bb9
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11:e526617a6bb9 12:c782e0edc4f1
1 <tool id="bedtools_bamtobed" name="Convert from BAM to BED" version="0.2.0"> 1 <tool id="bedtools_bamtobed" name="Convert from BAM to BED" version="@WRAPPER_VERSION@.0">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
10 $option 10 $option
11 $ed_score 11 $ed_score
12 -i '$input' 12 -i '$input'
13 &gt; '$output' 13 &gt; '$output'
14 #if str($tag): 14 #if str($tag):
15 -tag $tag 15 -tag $tag
16 #end if 16 #end if
17 </command> 17 </command>
18 <inputs> 18 <inputs>
19 <param format="bam" name="input" type="data" label="Convert the following BAM file to BED"/> 19 <param format="bam" name="input" type="data" label="Convert the following BAM file to BED"/>
20 <param name="option" type="select" label="What type of BED output would you like"> 20 <param name="option" type="select" label="What type of BED output would you like">