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comparison clusterBed.xml @ 12:c782e0edc4f1 draft default tip

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author bgruening
date Thu, 19 Jun 2014 10:12:00 -0400
parents e526617a6bb9
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11:e526617a6bb9 12:c782e0edc4f1
1 <tool id="bedtools_clusterbed" name="ClusterBed" version="0.2.0"> 1 <tool id="bedtools_clusterbed" name="ClusterBed" version="@WRAPPER_VERSION@.0">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
12 -i $inputA 12 -i $inputA
13 &gt; $output 13 &gt; $output
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> 16 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
17 17 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness."
18 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." help="That is, only cluster features that are the same strand. By default, this is disabled." /> 18 help="That is, only cluster features that are the same strand. By default, this is disabled." />
19 <param name="distance" type="integer" value="0" label="Maximum distance between features allowed for features to be clustered" help="Default is 0. That is, overlapping and/or book-ended features are clustered." /> 19 <param name="distance" type="integer" value="0"
20 label="Maximum distance between features allowed for features to be clustered"
21 help="Default is 0. That is, overlapping and/or book-ended features are clustered." />
20 </inputs> 22 </inputs>
21 <outputs> 23 <outputs>
22 <data format_source="inputA" name="output" metadata_source="inputA" label=""/> 24 <data format_source="inputA" name="output" metadata_source="inputA" label=""/>
23 </outputs> 25 </outputs>
24 <help> 26 <help>