Mercurial > repos > bgruening > bamhash

diff bamhash.xml @ 3:27f5da0a6bd9 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bamhash commit 7aa0b566d492b1830c0bd2e54ddf4a26be95f76d
author bgruening
date Thu, 17 Sep 2015 08:00:22 -0400
parents a19b36f7ff5d
children 37a9f9f502a2
line wrap: on
line diff
--- a/bamhash.xml	Thu Sep 17 06:50:06 2015 -0400
+++ b/bamhash.xml	Thu Sep 17 08:00:22 2015 -0400
@@ -55,33 +55,35 @@
                 <option value="fasta">FASTA file(s)</option>
             </param>
             <when value="bam">
-                <param name="input_bam" multiple="True" type="data" format="bam" label="Input file - BAM format"/>
+                <param name="input_bam" multiple="True" type="data" format="bam" label="Input file in BAM format"/>
                 <param name="noQuality_bam" type="boolean" checked="false" truevalue="--no-quality"
                         falsevalue=""
                         label="Ignore read quality?" 
-                        help="Do not use read quality as part of checksum"/>
+                        help="Do not use read quality as part of checksum. (--no-quality)"/>
                 <param name="noPaired_bam" type="boolean" checked="false" truevalue="--no-paired"
                         falsevalue=""
-                        label="Bam files were not generated with paired-end reads?"/>
+                        label="Bam files were not generated with paired-end reads?"
+                        help="(--no-paired)" />
             </when>
             <when value="fasta">
-                <param name="input_fasta" multiple="True" type="data" format="fasta" label="Input file - FASTA format"/>
+                <param name="input_fasta" multiple="True" type="data" format="fasta" label="Input file in FASTA format"/>
             </when>
             <when value="fastq">
-                <param name="input_fastq" multiple="True" type="data" format="fastq" label="Input file - FASTQ format"/>
+                <param name="input_fastq" multiple="True" type="data" format="fastq" label="Input file in FASTQ format"/>
                 <param name="noQuality_fastq" type="boolean" checked="false" truevalue="--no-quality"
                         falsevalue=""
                         label="Ignore read quality?" 
-                        help="Do not use read quality as part of checksum"/>
+                        help="Do not use read quality as part of checksum. (--no-quality)"/>
                 <param name="noPaired_fastq" type="boolean" checked="false" truevalue="--no-paired"
                         falsevalue=""
-                        label="List of fastq files are not paired-end reads?"/>
+                        label="List of fastq files are not paired-end reads?"
+                        help="(--no-paired)" />
             </when>
         </conditional>
         <param name="readnames" type="boolean" checked="false" truevalue="--no-readnames"
                 falsevalue=""
                 label="Ignore readnames?" 
-                help="Do not use read names as part of checksum"/>
+                help="Do not use read names as part of checksum. (--no-readnames)"/>
 
     </inputs>
     <outputs>