Mercurial > repos > bgruening > augustus

diff extract_features.py @ 3:702d9e042295 draft

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Uploaded
author bgruening
date Thu, 06 Jun 2013 13:26:37 -0400
parents 3c5116448979
children bcfe8e0731f8
line wrap: on
line diff
--- a/extract_features.py	Thu Jun 06 12:51:27 2013 -0400
+++ b/extract_features.py	Thu Jun 06 13:26:37 2013 -0400
@@ -55,9 +55,11 @@
 
             if args.codingseq and line.startswith('coding sequence = ['):
                 if line.endswith(']'):
-                    coding_seq = line[19:-1]
+                    line = line[19:-1]
+                    coding_seq = line
                 else:
-                    coding_seq = line[19:]
+                    line = line[19:]
+                    coding_seq = line
 
             if protein_seq:
                 if line.endswith(']'):