Mercurial > repos > bgruening > antismash
diff tool_dependencies.xml @ 16:e2df6fe8b447 draft
Uploaded
author | bgruening |
---|---|
date | Fri, 11 Oct 2013 16:46:08 -0400 |
parents | 9a099b9b6857 |
children | 213d82f33fc2 |
line wrap: on
line diff
--- a/tool_dependencies.xml Fri Oct 11 16:06:28 2013 -0400 +++ b/tool_dependencies.xml Fri Oct 11 16:46:08 2013 -0400 @@ -33,6 +33,11 @@ <action type="chmod"> <file mode="750">$INSTALL_DIR/run_antismash.py</file> </action> + <!-- AntiSmash has a prerequirement check that is not useful for us, because we + do not offer the option for genprediction and do not install glimmer and Co. + For that reason deactivate the check. + --> + <action type="shell_command">sed -i 's/check_prereqs(plugins, options) > 0/True/g' $INSTALL_DIR/run_antismash.py</action> <action type="download_file">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action> <action type="shell_command">tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast</action> </actions> @@ -46,6 +51,11 @@ <action type="chmod"> <file mode="750">$INSTALL_DIR/run_antismash.py</file> </action> + <!-- AntiSmash has a prerequirement check that is not useful for us, because we + do not offer the option for genprediction and do not install glimmer and Co. + For that reason deactivate the check. + --> + <action type="shell_command">sed -i 's/check_prereqs(plugins, options) > 0/True/g' $INSTALL_DIR/run_antismash.py</action> <action type="download_file">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action> <action type="shell_command">tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast</action> </actions> @@ -63,7 +73,7 @@ do not offer the option for genprediction and do not install glimmer and Co. For that reason deactivate the check. --> - <action type="shell_command">sed -i s/check_prereqs(plugins, options) > 0/True/</action> + <action type="shell_command">sed -i 's/check_prereqs(plugins, options) > 0/True/g' $INSTALL_DIR/run_antismash.py</action> <action type="download_file">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action> <action type="shell_command">tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast</action> </actions> @@ -77,6 +87,11 @@ <action type="chmod"> <file mode="750">$INSTALL_DIR/run_antismash.py</file> </action> + <!-- AntiSmash has a prerequirement check that is not useful for us, because we + do not offer the option for genprediction and do not install glimmer and Co. + For that reason deactivate the check. + --> + <action type="shell_command">sed -i 's/check_prereqs(plugins, options) > 0/True/g' $INSTALL_DIR/run_antismash.py</action> <action type="download_file">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action> <action type="shell_command">tar xfvz clusterblast.tar.gz -C $INSTALL_DIR/antismash/generic_modules/clusterblast</action> </actions>