Mercurial > repos > bgruening > antismash
diff tool_dependencies.xml @ 0:7ad005dfbe78 draft
Uploaded
author | bgruening |
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date | Fri, 04 Oct 2013 03:33:05 -0400 |
parents | |
children | abd9e69bb886 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Oct 04 03:33:05 2013 -0400 @@ -0,0 +1,65 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="blast+" version="2.2.28"> + <repository changeset_revision="d794cb2b0f45" name="package_blast_plus_2_2_28" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="hmmer " version="2.3.2"> + <repository changeset_revision="64510d86d77d" name="package_hmmer_2_3_2" owner="lionelguy" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="hmmer" version="3.0"> + <repository changeset_revision="3bc37773c609" name="package_hmmer_3_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="muscle" version="3.8.31"> + <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="antismash" version="2.0.2"> + <install version="1.0"> + <actions_group> + <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. --> + <actions os="darwin"> + <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/run_antismash.py</file> + </action> + </actions> + <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. --> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/run_antismash.py</file> + </action> + </actions> + <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. --> + <actions architecture="i386" os="linux"> + <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/run_antismash.py</file> + </action> + </actions> + <action type="setup_virtualenv">biopython=1.62 +helperlibs=0.1.2 +straight.plugin=1.4.0-post-1</action> + + <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> + AntiSmash installation with all dependencies. + </readme> + </package> +</tool_dependency>