Mercurial > repos > bebatut > sortmerna

diff tool_dependencies.xml @ 12:bf5dbe8f7d4c draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 86b25c80bf4746a0bb73002040487242048a40d2-dirty
author bebatut
date Tue, 10 Nov 2015 04:05:25 -0500
parents 87327d15b045
children 4016c1db6886
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--- a/tool_dependencies.xml	Fri Nov 06 04:40:46 2015 -0500
+++ b/tool_dependencies.xml	Tue Nov 10 04:05:25 2015 -0500
@@ -5,8 +5,10 @@
             <actions>
                 <action type="download_by_url" target_filename="sortmerna-2.0.tar.gz">https://github.com/biocore/sortmerna/archive/2.0.tar.gz</action>
                 <action type="autoconf"/>
+                <action type="change_directory">../</action>
+                <action type="shell_command">mv sortmerna-2.0/ $INSTALL_DIR/</action>
                 <action type="set_environment">
-                    <environment_variable name="SORTMERNADIR" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="SORTMERNADIR" action="set_to">$INSTALL_DIR/sortmerna-2.0/</environment_variable>
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>