Mercurial > repos > bebatut > sortmerna

diff tool_dependencies.xml @ 0:87327d15b045 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 556070f12fb6442e52820d852f7e7a85a28117f2-dirty
author bebatut
date Wed, 28 Oct 2015 06:41:11 -0400
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children bf5dbe8f7d4c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Oct 28 06:41:11 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="sortmerna" version="2.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="sortmerna-2.0.tar.gz">https://github.com/biocore/sortmerna/archive/2.0.tar.gz</action>
+                <action type="autoconf"/>
+                <action type="set_environment">
+                    <environment_variable name="SORTMERNADIR" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        SortMeRNA requires g++ 4.3 or later. 
+
+        Note: the Clang compiler on Mac (distributed through Xcode) does not 
+        support multithreading. The user is recommended to install the original 
+        GCC compiler via MacPorts
+        </readme>
+    </package>
+</tool_dependency>
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