Mercurial > repos > bebatut > sortmerna

diff tool_dependencies.xml @ 13:4016c1db6886 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 283fe2285a4e95f4505133fc7fa1eee96a4d274d
author bebatut
date Tue, 17 Nov 2015 06:00:30 -0500
parents bf5dbe8f7d4c
children 011ec5258e71
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line diff
--- a/tool_dependencies.xml	Tue Nov 10 04:05:25 2015 -0500
+++ b/tool_dependencies.xml	Tue Nov 17 06:00:30 2015 -0500
@@ -6,7 +6,11 @@
                 <action type="download_by_url" target_filename="sortmerna-2.0.tar.gz">https://github.com/biocore/sortmerna/archive/2.0.tar.gz</action>
                 <action type="autoconf"/>
                 <action type="change_directory">../</action>
-                <action type="shell_command">mv sortmerna-2.0/ $INSTALL_DIR/</action>
+                <action type="make_directory">$INSTALL_DIR/sortmerna-2.0/</action>
+                <action type="move_directory_files">
+                    <source_directory>sortmerna-2.0/</source_directory>
+                    <destination_directory>$INSTALL_DIR/sortmerna-2.0/</destination_directory>
+                </action>
                 <action type="set_environment">
                     <environment_variable name="SORTMERNADIR" action="set_to">$INSTALL_DIR/sortmerna-2.0/</environment_variable>
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>