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comparison sortmerna.xml @ 18:63e6d7aefbe6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 044a991b45c9135339daf138929887cd8e93a1bf-dirty
author bebatut
date Mon, 12 Jun 2017 07:54:51 -0400
parents 715c75d6d784
children 4f476a49f079
comparison
equal deleted inserted replaced
17:715c75d6d784 18:63e6d7aefbe6
35 #set $sep = ':' 35 #set $sep = ':'
36 #end for 36 #end for
37 #else if str( $databases_type.databases_selector ) == 'cached_to_index' 37 #else if str( $databases_type.databases_selector ) == 'cached_to_index'
38 ## databases path is not directly accessible, must match by hand with LOC file contents 38 ## databases path is not directly accessible, must match by hand with LOC file contents
39 #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data]) 39 #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data])
40 #for $db in $databases_type.input_databases.value 40 #for $db in $databases_type.input_databases.fields.path.split(",")
41 #set $ref += $sep + $databases_type.input_databases.fields.path + '.fasta,' + $databases_type.input_databases.fields.path + '-reindexed' 41 #set $ref += $sep + $db + '.fasta,' + $db + '-reindexed'
42 #set $sep = ':' 42 #set $sep = ':'
43 #end for 43 #end for
44 #else: 44 #else:
45 ## databases path is not directly accessible, must match by hand with LOC file contents 45 ## databases path is not directly accessible, must match by hand with LOC file contents
46 #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data]) 46 #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data])
47 #for $db in $databases_type.input_databases.value 47 #for $db in $databases_type.input_databases.fields.path.split(",")
48 #set $ref += $sep + $databases_type.input_databases.fields.path + '.fasta,' + $databases_type.input_databases.fields.path 48 #set $ref += $sep + $db + '.fasta,' + $db
49 #set $sep = ':' 49 #set $sep = ':'
50 #end for 50 #end for
51 #end if 51 #end if
52 52
53 #if str( $databases_type.databases_selector ) != 'cached': 53 #if str( $databases_type.databases_selector ) != 'cached':