Mercurial > repos > bebatut > reago

diff tool_dependencies.xml @ 0:04749f9173e5 draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/reago commit 3be2f6bc80a4743256b13ed64500448e766ddcd7
author bebatut
date Tue, 08 Dec 2015 10:35:06 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Dec 08 10:35:06 2015 -0500
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="infernal" version="1.1">
+        <repository changeset_revision="bd0a14c43fc2" name="package_infernal_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="genometools" version="1.5.7">
+        <repository changeset_revision="ea7ba24d640f" name="package_genometools_1_5_7" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="reago" version="1.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/chengyuan/reago-1.1/archive/master.zip</action>
+                <action type="move_file">
+                    <source>reago.py</source>
+                    <destination>$INSTALL_DIR/</destination>
+                </action>
+                <action type="move_file">
+                    <source>filter_input.py</source>
+                    <destination>$INSTALL_DIR/</destination>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>cm</source_directory>
+                    <destination_directory>$INSTALL_DIR/cm/</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="REAGO_DIR">$INSTALL_DIR/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>