Mercurial > repos > bebatut > qiime
diff tool-data/qiime_reference_db.loc.sample @ 0:c1bd0c560018 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime commit bcbe76277f3e60303faf826f8ce7f018bc663a9a-dirty
| author | bebatut |
|---|---|
| date | Tue, 02 Feb 2016 05:50:37 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/qiime_reference_db.loc.sample Tue Feb 02 05:50:37 2016 -0500 @@ -0,0 +1,32 @@ +#<unique_id> <database_caption> <fasta_file_path> +# +#For each reference database, you need to download the fasta file in qiime path +# +#List of useful db for qiime: http://qiime.org/home_static/dataFiles.html +# +#silva-119-90 SILVA v.119 90% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned.fna +#silva-119-90-16S SILVA v.119 90% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned_16S_only.fna +#silva-119-90-18S SILVA v.119 90% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned_18S_only.fna +#silva-119-94 SILVA v.119 94% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned.fna +#silva-119-94-16S SILVA v.119 94% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned_16S_only.fna +#silva-119-94-18S SILVA v.119 94% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned_18S_only.fna +#silva-119-97 SILVA v.119 97% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned.fna +#silva-119-97-16S SILVA v.119 97% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned_16S_only.fna +#silva-119-97-18S SILVA v.119 97% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned_18S_only.fna +#silva-119-99 SILVA v.119 99% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned.fna +#silva-119-99-16S SILVA v.119 99% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned_16S_only.fna +#silva-119-99-18S SILVA v.119 99% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned_18S_only.fna +#gg-13-8-61 Greengenes v.13.8 61% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_61.fasta +#gg-13-8-64 Greengenes v.13.8 64% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_64.fasta +#gg-13-8-67 Greengenes v.13.8 67% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_67.fasta +#gg-13-8-70 Greengenes v.13.8 70% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_70.fasta +#gg-13-8-73 Greengenes v.13.8 73% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_73.fasta +#gg-13-8-76 Greengenes v.13.8 76% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_76.fasta +#gg-13-8-79 Greengenes v.13.8 79% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_79.fasta +#gg-13-8-82 Greengenes v.13.8 82% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_82.fasta +#gg-13-8-85 Greengenes v.13.8 85% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_85.fasta +#gg-13-8-88 Greengenes v.13.8 88% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_88.fasta +#gg-13-8-91 Greengenes v.13.8 91% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_91.fasta +#gg-13-8-94 Greengenes v.13.8 94% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_94.fasta +#gg-13-8-97 Greengenes v.13.8 97% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_97.fasta +#gg-13-8-99 Greengenes v.13.8 99% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_99.fasta \ No newline at end of file