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comparison tool-data/qiime_reference_db.loc.sample @ 0:c1bd0c560018 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime commit bcbe76277f3e60303faf826f8ce7f018bc663a9a-dirty
author bebatut
date Tue, 02 Feb 2016 05:50:37 -0500
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-1:000000000000 0:c1bd0c560018
1 #<unique_id> <database_caption> <fasta_file_path>
2 #
3 #For each reference database, you need to download the fasta file in qiime path
4 #
5 #List of useful db for qiime: http://qiime.org/home_static/dataFiles.html
6 #
7 #silva-119-90 SILVA v.119 90% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned.fna
8 #silva-119-90-16S SILVA v.119 90% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned_16S_only.fna
9 #silva-119-90-18S SILVA v.119 90% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned_18S_only.fna
10 #silva-119-94 SILVA v.119 94% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned.fna
11 #silva-119-94-16S SILVA v.119 94% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned_16S_only.fna
12 #silva-119-94-18S SILVA v.119 94% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned_18S_only.fna
13 #silva-119-97 SILVA v.119 97% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned.fna
14 #silva-119-97-16S SILVA v.119 97% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned_16S_only.fna
15 #silva-119-97-18S SILVA v.119 97% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned_18S_only.fna
16 #silva-119-99 SILVA v.119 99% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned.fna
17 #silva-119-99-16S SILVA v.119 99% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned_16S_only.fna
18 #silva-119-99-18S SILVA v.119 99% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned_18S_only.fna
19 #gg-13-8-61 Greengenes v.13.8 61% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_61.fasta
20 #gg-13-8-64 Greengenes v.13.8 64% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_64.fasta
21 #gg-13-8-67 Greengenes v.13.8 67% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_67.fasta
22 #gg-13-8-70 Greengenes v.13.8 70% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_70.fasta
23 #gg-13-8-73 Greengenes v.13.8 73% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_73.fasta
24 #gg-13-8-76 Greengenes v.13.8 76% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_76.fasta
25 #gg-13-8-79 Greengenes v.13.8 79% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_79.fasta
26 #gg-13-8-82 Greengenes v.13.8 82% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_82.fasta
27 #gg-13-8-85 Greengenes v.13.8 85% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_85.fasta
28 #gg-13-8-88 Greengenes v.13.8 88% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_88.fasta
29 #gg-13-8-91 Greengenes v.13.8 91% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_91.fasta
30 #gg-13-8-94 Greengenes v.13.8 94% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_94.fasta
31 #gg-13-8-97 Greengenes v.13.8 97% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_97.fasta
32 #gg-13-8-99 Greengenes v.13.8 99% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_99.fasta