diff README.md @ 4:acaf871de2ea draft default tip

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/prinseq/ commit ade7dfd3c1f1c5369e338013c5ca2ec7115cafe6-dirty
author bebatut
date Wed, 27 Jan 2016 03:55:09 -0500
parents 10ac5c567b73
children
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--- a/README.md	Tue Nov 17 06:02:09 2015 -0500
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-Galaxy wrapper for PRINSEQ
-===========================
-
-PRINSEQ is a tool for easy and rapid quality control and data processing of 
-metagenomic and metatranscriptomic datasets. This tool allow to process the 
-sequences with filtering and trimming. For more information, check the 
-[user manual](http://prinseq.sourceforge.net/manual.html)
-
-# Installation
-
-## Automated installation
-
-On a Galaxy instance, the wrapper can be automatically installed using the 
-ToolShed. This will automatically install the dependencies, configure the Galaxy
-instance for the tool and data, ...
-
-## Manual installation
-
-For manual installation, the files `prinseq.xml` must be put in the `tools/prinseq/`
- folder and add the XML files to Galaxy's `tool_conf.xml` (in `config` folder) as 
-normal:
-
-```
-<section name="Control quality" id="prinseq">
-    <tool file="prinseq/prinseq.xml" />
-</section>
-```
-
-PRINSEQ must be installed somewhere on the system path. It can be done using:
-
-```
-planemo dependency_script ~/repositories/galaxytools/tools/prinseq/
-bash dep_install.sh
-source env.sh
-```
-
-To test the Galaxy integration, the functional tests can be runned:
-
-```
-./run_tests.sh -sid prinseq
-```
-
-# Bug Reports
-
-Any bug can be filed in an issue [here](https://github.com/ASaiM/galaxytools/issues).
-
-# Developers
-
-A release can be pushed to the test or main "Galaxy Tool Shed", using the following 
-Planemo commands (with required Tool Shed access detailed in `~/.planemo.yml`):
-
-```
-planemo shed_update -t testtoolshed --check_diff ~/repositories/galaxytools/tools/prinseq/
-```
-
-or:
-
-```
-planemo shed_update -t toolshed --check_diff ~/repositories/galaxytools/tools/prinseq/
-```
-
-# License (Apache 2) 
-
-This wrapper are released under Apache 2 License. See the [LICENSE file](https://github.com/ASaiM/galaxytools/blob/master/LICENSE) for details
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