Mercurial > repos > bebatut > package_rdptools_2_0_2

changeset 0:0ba421d19a18 draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
author bebatut
date Tue, 10 Nov 2015 04:50:06 -0500
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files tool_dependencies.xml
diffstat 1 files changed, 32 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 10 04:50:06 2015 -0500
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="ant" version="1.9.6">
+        <repository changeset_revision="c49abc8cead0" name="package_ant_1_9_6" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="rdptools" version="2.0.2">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone --recursive https://github.com/rdpstaff/RDPTools.git rdptools</action>
+                <action type="change_directory">rdptools</action>
+                <action type="shell_command">git checkout 2.0.2</action>
+                <action type="shell_command">git submodule update --init</action>
+                <action type="shell_command">make</action>
+                <action type="change_directory">../</action>
+                <action type="shell_command">mv rdptools/ $INSTALL_DIR/</action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="RDP_TOOLS_DIR">$INSTALL_DIR/rdptools/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+RDPTols is an open source command-line tool suite for performing a complete 
+workflow of analysis tasks of NGS data.
+
+Clone the github repository and configure the tools.
+
+For more details, see: 
+https://github.com/rdpstaff/RDPTools
+        </readme>
+    </package>
+</tool_dependency>