Mercurial > repos > bebatut > package_metaphlan2_2_2_0

changeset 1:3cb6227f905e draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
author bebatut
date Tue, 12 Apr 2016 02:52:46 -0400
parents bbac0ef27bb2
children
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Mar 31 03:18:34 2016 -0400
+++ b/tool_dependencies.xml	Tue Apr 12 02:52:46 2016 -0400
@@ -10,9 +10,13 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.2.0.zip</action>
+                <action type="move_file">
+                    <source>metaphlan2.py</source>
+                    <destination>$INSTALL_DIR/bin/</destination>
+                </action>
                 <action type="move_directory_files">
-                    <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                    <source_directory>utils/</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin/</destination_directory>
                 </action>
                 <action type="setup_python_environment">
                     <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
@@ -25,7 +29,7 @@
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                     <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
                 </action>
             </actions>
         </install>