Mercurial > repos > bebatut > package_humann_2_0
comparison tool_dependencies.xml @ 0:abe443d7f9e7 draft default tip
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann_2_0 commit 313952cc4a20e8fb82380bfbf5ede26217197719
| author | bebatut |
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| date | Mon, 22 Feb 2016 07:08:08 -0500 |
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| children |
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| -1:000000000000 | 0:abe443d7f9e7 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="humann2" version="2.0"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action> | |
| 7 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 8 <action type="shell_command"> | |
| 9 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
| 10 python setup.py install --bypass-dependencies-install --install-lib $INSTALL_DIR/lib/python --install-scripts=$INSTALL_DIR/</action> | |
| 11 <action type="make_directory">$INSTALL_DIR/databases</action> | |
| 12 <action type="set_environment"> | |
| 13 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 14 <environment_variable name="HUMANN2_DIR" action="set_to">$INSTALL_DIR/</environment_variable> | |
| 15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 16 </action> | |
| 17 </actions> | |
| 18 </install> | |
| 19 <readme></readme> | |
| 20 </package> | |
| 21 </tool_dependency> |